Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001368A_C01 KMC001368A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87154.1|AF480496_8 putative SET-domain transcriptional reg... 115 3e-25
gb|AAO32935.1| SET domain protein SDG117 [Zea mays] 112 3e-24
ref|NP_179955.1| putative SET-domain transcriptional regulator; ... 103 1e-21
ref|NP_703954.1| SET-domain protein, putative [Plasmodium falcip... 78 1e-13
ref|XP_227444.1| similar to Histone-lysine N-methyltransferase, ... 76 3e-13
>gb|AAL87154.1|AF480496_8 putative SET-domain transcriptional regulator [Oryza sativa
(japonica cultivar-group)]
Length = 761
Score = 115 bits (289), Expect = 3e-25
Identities = 50/80 (62%), Positives = 64/80 (79%)
Frame = -2
Query: 606 IDASKYGNVSRFINHSCSPNLVSHQVLIESMDCERTHIGLYASRDIALGEELTYDYQYEL 427
IDA++YGNVSRFINHSCSPNL + V +ES DC+ HIGL+A++DI +GEEL YDY +L
Sbjct: 682 IDATRYGNVSRFINHSCSPNLSTRLVSVESKDCQLAHIGLFANQDILMGEELAYDYGQKL 741
Query: 426 VPGEGSPCLCESLKCRGRLY 367
+PG+G PC C + CRGR+Y
Sbjct: 742 LPGDGCPCHCGAKNCRGRVY 761
>gb|AAO32935.1| SET domain protein SDG117 [Zea mays]
Length = 1198
Score = 112 bits (281), Expect = 3e-24
Identities = 49/80 (61%), Positives = 65/80 (81%)
Frame = -2
Query: 606 IDASKYGNVSRFINHSCSPNLVSHQVLIESMDCERTHIGLYASRDIALGEELTYDYQYEL 427
IDA++ GNVSR+I+HSCSPNL + VL+ES DC+ HIGL+A++DIA+GEEL YDY+ +L
Sbjct: 1119 IDATRSGNVSRYISHSCSPNLSTRLVLVESKDCQLAHIGLFANQDIAVGEELAYDYRQKL 1178
Query: 426 VPGEGSPCLCESLKCRGRLY 367
V G+G PC C + CRGR+Y
Sbjct: 1179 VAGDGCPCHCGTTNCRGRVY 1198
>ref|NP_179955.1| putative SET-domain transcriptional regulator; protein id:
At2g23750.1 [Arabidopsis thaliana]
gi|7488352|pir||T02416 probable SET-domain transcription
regulator At2g23750 [imported] - Arabidopsis thaliana
gi|3152609|gb|AAC17088.1| putative SET-domain
transcriptional regulator [Arabidopsis thaliana]
Length = 203
Score = 103 bits (258), Expect = 1e-21
Identities = 50/82 (60%), Positives = 60/82 (72%), Gaps = 3/82 (3%)
Frame = -2
Query: 606 IDASKYGNVSRFINHSCSPNLVSHQVLIESMDCERTHIGLYASRDIALGEELTYDYQYEL 427
IDA+ +GN+SRFINHSCSPNLV+HQV++ESM+ HIGLYAS DIA GEE+T DY
Sbjct: 121 IDATTHGNISRFINHSCSPNLVNHQVIVESMESPLAHIGLYASMDIAAGEEITRDYGRRP 180
Query: 426 VPGEGS---PCLCESLKCRGRL 370
VP E PC C++ CRG L
Sbjct: 181 VPSEQENEHPCHCKATNCRGLL 202
>ref|NP_703954.1| SET-domain protein, putative [Plasmodium falciparum 3D7]
gi|23498615|emb|CAD50567.1| SET-domain protein, putative
[Plasmodium falciparum 3D7]
Length = 6761
Score = 77.8 bits (190), Expect = 1e-13
Identities = 44/81 (54%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = -2
Query: 606 IDASKYGNVSRFINHSCSPNLVSHQVLIESMDCERTHIGLYASRDIALGEELTYDYQYEL 427
IDA+K+GNVSRFINHSC PN I S D HI ++A RDIA EE+TYDYQ+
Sbjct: 6684 IDATKWGNVSRFINHSCEPNCFCK---IVSCDQNLKHIVIFAKRDIAAHEEITYDYQFG- 6739
Query: 426 VPGEGSP--CLCESLKCRGRL 370
V EG CLC S C GR+
Sbjct: 6740 VESEGKKLICLCGSSTCLGRM 6760
>ref|XP_227444.1| similar to Histone-lysine N-methyltransferase, H3 lysine-9 specific 4
(Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET
domain bifurcated 1) (ERG-associated protein with SET
domain) (ESET) [Rattus norvegicus]
Length = 854
Score = 76.3 bits (186), Expect = 3e-13
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = -2
Query: 606 IDASKYGNVSRFINHSCSPNLVSHQVLIESMDCERTHIGLYASRDIALGEELTYDYQYEL 427
IDA GN+ R++NHSCSPNL V +++ D + +AS+ I G ELT+DY YE+
Sbjct: 773 IDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEV 832
Query: 426 --VPGEGSPCLCESLKCRGRL 370
V G+ C C +++CRGRL
Sbjct: 833 GSVEGKELLCCCGAIECRGRL 853
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,786,809
Number of Sequences: 1393205
Number of extensions: 9865934
Number of successful extensions: 21429
Number of sequences better than 10.0: 398
Number of HSP's better than 10.0 without gapping: 20671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21105
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
