Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001366A_C01 KMC001366A_c01
(700 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199108.1| putative protein; protein id: At5g42940.1, supp... 153 2e-36
pir||T51859 RING-H2 finger protein RHG1a [imported] - Arabidopsi... 152 6e-36
ref|NP_195130.1| putative protein; protein id: At4g34040.1 [Arab... 148 6e-35
ref|NP_683397.1| similar to putative RING zinc finger protein; p... 145 7e-34
ref|NP_175132.1| hypothetical protein; protein id: At1g45180.1 [... 145 7e-34
>ref|NP_199108.1| putative protein; protein id: At5g42940.1, supported by cDNA:
gi_18087615 [Arabidopsis thaliana]
gi|9758583|dbj|BAB09196.1| contains similarity to RING
zinc finger protein~gene_id:MBD2.14 [Arabidopsis
thaliana] gi|18087616|gb|AAL58938.1|AF462851_1
AT5g42940/MBD2_14 [Arabidopsis thaliana]
gi|28416527|gb|AAO42794.1| At5g42940/MBD2_14
[Arabidopsis thaliana]
Length = 691
Score = 153 bits (387), Expect = 2e-36
Identities = 70/99 (70%), Positives = 82/99 (82%)
Frame = -1
Query: 700 LDVDNMSYEELLALEERIGNVNTGLTEETIMKLLIQKQYSAEPGSQGDAEPCSVCQEEYD 521
LDVDNMSYEELLALEERIG+V TG+ EETI L Q++Y + S DAEPC VCQEEY
Sbjct: 586 LDVDNMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKSNTKSPQDAEPCCVCQEEYT 645
Query: 520 DGDDIGTLDCGHDFHSYCIKQWLMHKNLCPICKTTGLST 404
+G+D+GTL+CGH+FHS CIK+WL KNLCPICKTTGL+T
Sbjct: 646 EGEDMGTLECGHEFHSQCIKEWLKQKNLCPICKTTGLNT 684
>pir||T51859 RING-H2 finger protein RHG1a [imported] - Arabidopsis thaliana
(fragment) gi|3822225|gb|AAC69857.1| RING-H2 finger
protein RHG1a [Arabidopsis thaliana]
Length = 190
Score = 152 bits (383), Expect = 6e-36
Identities = 69/99 (69%), Positives = 82/99 (82%)
Frame = -1
Query: 700 LDVDNMSYEELLALEERIGNVNTGLTEETIMKLLIQKQYSAEPGSQGDAEPCSVCQEEYD 521
LDVDNMSYEELLALEERIG+V TG+ EETI L Q++Y + S DAEPC VCQEEY
Sbjct: 85 LDVDNMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKSNTKSPQDAEPCCVCQEEYT 144
Query: 520 DGDDIGTLDCGHDFHSYCIKQWLMHKNLCPICKTTGLST 404
+G+D+GTL+CGH+FHS CI++WL KNLCPICKTTGL+T
Sbjct: 145 EGEDMGTLECGHEFHSQCIEEWLKQKNLCPICKTTGLNT 183
>ref|NP_195130.1| putative protein; protein id: At4g34040.1 [Arabidopsis thaliana]
gi|7486285|pir||T05432 hypothetical protein F28A23.200 -
Arabidopsis thaliana gi|2911058|emb|CAA17568.1| putative
protein [Arabidopsis thaliana]
gi|7270353|emb|CAB80121.1| putative protein [Arabidopsis
thaliana]
Length = 666
Score = 148 bits (374), Expect = 6e-35
Identities = 70/100 (70%), Positives = 82/100 (82%), Gaps = 1/100 (1%)
Frame = -1
Query: 700 LDVDNMSYEELLALEERIGNVNTGLTEETIMKLLIQ-KQYSAEPGSQGDAEPCSVCQEEY 524
LDVDNMSYEELLAL ERIG+V+TGL+EE I+K++ Q K S+ GS D EPC VCQEEY
Sbjct: 567 LDVDNMSYEELLALGERIGDVSTGLSEEVILKVMKQHKHTSSAAGSHQDMEPCCVCQEEY 626
Query: 523 DDGDDIGTLDCGHDFHSYCIKQWLMHKNLCPICKTTGLST 404
+GDD+GTL CGH+FH+ C+KQWLM KNLCPICKT LST
Sbjct: 627 AEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICKTVALST 666
>ref|NP_683397.1| similar to putative RING zinc finger protein; protein id:
At1g45228.1 [Arabidopsis thaliana]
Length = 779
Score = 145 bits (365), Expect = 7e-34
Identities = 66/99 (66%), Positives = 79/99 (79%)
Frame = -1
Query: 700 LDVDNMSYEELLALEERIGNVNTGLTEETIMKLLIQKQYSAEPGSQGDAEPCSVCQEEYD 521
LDVDNM+YEELL+LEERIG+V TGL EETI L Q++Y + S + EPC VCQEEY
Sbjct: 675 LDVDNMTYEELLSLEERIGDVCTGLNEETISNRLKQQKYKSSTRSSQEVEPCCVCQEEYK 734
Query: 520 DGDDIGTLDCGHDFHSYCIKQWLMHKNLCPICKTTGLST 404
+ ++IG L+CGHDFHS CIK+WL KNLCPICKTTGL+T
Sbjct: 735 EEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKTTGLNT 773
>ref|NP_175132.1| hypothetical protein; protein id: At1g45180.1 [Arabidopsis
thaliana] gi|7767667|gb|AAF69164.1|AC007915_16 F27F5.26
[Arabidopsis thaliana]
Length = 645
Score = 145 bits (365), Expect = 7e-34
Identities = 66/99 (66%), Positives = 79/99 (79%)
Frame = -1
Query: 700 LDVDNMSYEELLALEERIGNVNTGLTEETIMKLLIQKQYSAEPGSQGDAEPCSVCQEEYD 521
LDVDNM+YEELL+LEERIG+V TGL EETI L Q++Y + S + EPC VCQEEY
Sbjct: 541 LDVDNMTYEELLSLEERIGDVCTGLNEETISNRLKQQKYKSSTRSSQEVEPCCVCQEEYK 600
Query: 520 DGDDIGTLDCGHDFHSYCIKQWLMHKNLCPICKTTGLST 404
+ ++IG L+CGHDFHS CIK+WL KNLCPICKTTGL+T
Sbjct: 601 EEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKTTGLNT 639
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,611,108
Number of Sequences: 1393205
Number of extensions: 11542229
Number of successful extensions: 28993
Number of sequences better than 10.0: 1125
Number of HSP's better than 10.0 without gapping: 27151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28814
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
