Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001363A_C01 KMC001363A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG44817.1| peroxisome biogenesis protein PEX1 [Arabidopsis t... 66 4e-10
ref|NP_196464.1| putative protein; protein id: At5g08470.1 [Arab... 56 4e-07
pir||E86349 hypothetical protein F8K7.6 - Arabidopsis thaliana g... 34 1.3
ref|NP_704367.1| u3 small nucleolar ribonucleoprotein protein, p... 33 2.3
emb|CAC18202.2| conserved hypothetical protein [Neurospora crass... 33 3.9
>gb|AAG44817.1| peroxisome biogenesis protein PEX1 [Arabidopsis thaliana]
Length = 1119
Score = 65.9 bits (159), Expect = 4e-10
Identities = 35/54 (64%), Positives = 43/54 (78%)
Frame = -2
Query: 615 ITDALLKLTASQARPSVSEEEKRRLYSIYHQFLDSKRSVAAQSRDAKGQRATLA 454
ITD LLK AS+ +PSVSE EK++LY IY QFLDS++S SR+AKG+RATLA
Sbjct: 1070 ITDPLLKSIASKTKPSVSETEKQKLYDIYSQFLDSRKS----SREAKGKRATLA 1119
>ref|NP_196464.1| putative protein; protein id: At5g08470.1 [Arabidopsis thaliana]
gi|9759341|dbj|BAB09996.1| contains similarity to ATPase;
peroxisome biosynthesis protein~gene_id:MAH20.3
[Arabidopsis thaliana]
Length = 1125
Score = 55.8 bits (133), Expect = 4e-07
Identities = 27/43 (62%), Positives = 34/43 (78%)
Frame = -2
Query: 615 ITDALLKLTASQARPSVSEEEKRRLYSIYHQFLDSKRSVAAQS 487
ITD LLK AS+ +PSVSE EK++LY IY QFLDS++SV+ S
Sbjct: 1081 ITDPLLKSIASKTKPSVSETEKQKLYDIYSQFLDSRKSVSLSS 1123
>pir||E86349 hypothetical protein F8K7.6 - Arabidopsis thaliana
gi|5263315|gb|AAD41417.1|AC007727_6 Similar to gb|X82404
chloroplast SecA protein from Pisum sativum.
[Arabidopsis thaliana]
Length = 977
Score = 34.3 bits (77), Expect = 1.3
Identities = 22/74 (29%), Positives = 33/74 (43%)
Frame = -2
Query: 438 RWNLFMW*KLLSGILFLPKRPPMFIYTSLILYRSLTWFNSSFVVFRKCNIYKNVTNKIDK 259
R N F W K +SG+LF YRS+T +V R C + ++T + +
Sbjct: 23 RSNKFPWTKPISGLLF---------------YRSVTPIKRCHLVRRSCVVSASLTGNLGR 67
Query: 258 KKVNPRFFFSFYFW 217
K N + F S +W
Sbjct: 68 LKRNVQDFTSMNYW 81
>ref|NP_704367.1| u3 small nucleolar ribonucleoprotein protein, putative [Plasmodium
falciparum 3D7] gi|23499106|emb|CAD51186.1| u3 small
nucleolar ribonucleoprotein protein, putative
[Plasmodium falciparum 3D7]
Length = 362
Score = 33.5 bits (75), Expect = 2.3
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 342 RSLTWFNSSFVV-FRKCNIYKNVTNKIDKKKVNPRFFFSFYFWSCEITKFIGEQW 181
R + +FN + ++ FR N KN TN+I K++ PRF F Y + E + E +
Sbjct: 292 RVIVFFNKNDIIYFRHYNWEKNQTNEIVLKEIGPRFSFVVYKINKETLDSLNEDY 346
>emb|CAC18202.2| conserved hypothetical protein [Neurospora crassa]
gi|28922688|gb|EAA31912.1| hypothetical protein
[Neurospora crassa]
Length = 203
Score = 32.7 bits (73), Expect = 3.9
Identities = 14/37 (37%), Positives = 27/37 (72%)
Frame = -1
Query: 460 SSVTISNAVEFVHVVEAALWDSFSPEEASDVHLHFIN 350
+++ I ++ F ++++A+W S SP ASDVH+HF++
Sbjct: 34 NAMKIQFSLAFYTLLDSAVW-SHSPLNASDVHIHFVD 69
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,720,107
Number of Sequences: 1393205
Number of extensions: 11003904
Number of successful extensions: 27537
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 26349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27514
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
