Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001361A_C01 KMC001361A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA77084.1| alpha-N-acetylglucosaminidase [Nicotiana tabacum] 132 4e-30
ref|NP_196873.1| alpha-N-acetylglucosaminidase; protein id: At5g... 112 5e-24
ref|NP_561782.1| probable alpha-N-acetylglucosaminidase [Clostri... 46 4e-04
gb|AAB36605.1| alpha-N-acetylglucosaminidase 44 0.001
ref|XP_220983.1| similar to alpha-N-acetylglucosaminidase [Mus m... 44 0.001
>emb|CAA77084.1| alpha-N-acetylglucosaminidase [Nicotiana tabacum]
Length = 811
Score = 132 bits (332), Expect = 4e-30
Identities = 61/81 (75%), Positives = 68/81 (83%)
Frame = -2
Query: 636 HDYANKFWSGILESYYLPRASSYFSHLSESLRQNKKFKLIEWRKPWILQSNKWQEGNELY 457
HDYANKFWSG+LE+YYLPRAS YF LS+SL++ FKL EWRK WI SNKWQE ELY
Sbjct: 731 HDYANKFWSGLLEAYYLPRASIYFELLSKSLKEKVDFKLEEWRKEWIAYSNKWQESTELY 790
Query: 456 PVKAQGDALAIAQALYEKYFA 394
PVKAQGDALAIA AL+EKYF+
Sbjct: 791 PVKAQGDALAIATALFEKYFS 811
>ref|NP_196873.1| alpha-N-acetylglucosaminidase; protein id: At5g13690.1, supported
by cDNA: gi_19423947 [Arabidopsis thaliana]
gi|9758035|dbj|BAB08696.1| alpha-N-acetylglucosaminidase
[Arabidopsis thaliana] gi|19423948|gb|AAL87291.1|
putative alpha-N-acetylglucosaminidase [Arabidopsis
thaliana] gi|21436231|gb|AAM51254.1| putative
alpha-N-acetylglucosaminidase [Arabidopsis thaliana]
Length = 806
Score = 112 bits (279), Expect = 5e-24
Identities = 50/81 (61%), Positives = 65/81 (79%), Gaps = 1/81 (1%)
Frame = -2
Query: 636 HDYANKFWSGILESYYLPRASSYFSHLSESLRQNKKFKLIEWRKPWILQSNKWQE-GNEL 460
HDYANKFWSG+LE YYLPRA YF+ + +SLR K FK+ +WR+ WI+ S+KWQ+ +E+
Sbjct: 725 HDYANKFWSGLLEDYYLPRARLYFNEMLKSLRDKKIFKVEKWRREWIMMSHKWQQSSSEV 784
Query: 459 YPVKAQGDALAIAQALYEKYF 397
YPVKA+GDALAI++ L KYF
Sbjct: 785 YPVKAKGDALAISRHLLSKYF 805
>ref|NP_561782.1| probable alpha-N-acetylglucosaminidase [Clostridium perfringens]
gi|18144526|dbj|BAB80572.1| probable
alpha-N-acetylglucosaminidase [Clostridium perfringens
str. 13]
Length = 2104
Score = 46.2 bits (108), Expect = 4e-04
Identities = 26/79 (32%), Positives = 39/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 633 DYANKFWSGILESYYLPRASSYFSHLSESLRQNKKFKLIEWRKPWILQSNKWQEGNELYP 454
DY+N+ WSG+ E YY R + + L L K I+W K NK + ++LYP
Sbjct: 833 DYSNRQWSGLTEDYYYARWEKWINGLQAELDGGAKAPNIDWFKMEYDWVNKKSDTDKLYP 892
Query: 453 VKAQGDALA-IAQALYEKY 400
+A + L +A+ E Y
Sbjct: 893 TEASNENLGELAKIAMESY 911
>gb|AAB36605.1| alpha-N-acetylglucosaminidase
Length = 639
Score = 44.3 bits (103), Expect = 0.001
Identities = 22/79 (27%), Positives = 42/79 (52%)
Frame = -2
Query: 633 DYANKFWSGILESYYLPRASSYFSHLSESLRQNKKFKLIEWRKPWILQSNKWQEGNELYP 454
DYANK +G++ +YY PR + L +S+ Q F+ ++ K + + YP
Sbjct: 553 DYANKQLAGLVANYYTPRWRLFLEALVDSVAQGIPFQQHQFDKNVFQLEQAFVLSKQRYP 612
Query: 453 VKAQGDALAIAQALYEKYF 397
+ +GD + +A+ ++ KY+
Sbjct: 613 SQPRGDTVDLAKKIFLKYY 631
>ref|XP_220983.1| similar to alpha-N-acetylglucosaminidase [Mus musculus] [Rattus
norvegicus]
Length = 633
Score = 44.3 bits (103), Expect = 0.001
Identities = 21/78 (26%), Positives = 41/78 (51%)
Frame = -2
Query: 633 DYANKFWSGILESYYLPRASSYFSHLSESLRQNKKFKLIEWRKPWILQSNKWQEGNELYP 454
DYANK +G++ YY PR + L+ SL + F+ ++ K + + YP
Sbjct: 549 DYANKQLAGLVADYYQPRWCLFLGTLAHSLARGIPFQQHQFEKSVFPLEQAFINNKKRYP 608
Query: 453 VKAQGDALAIAQALYEKY 400
++ QGD + +++ ++ K+
Sbjct: 609 IQPQGDTVDLSKKIFLKF 626
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,636,683
Number of Sequences: 1393205
Number of extensions: 10158691
Number of successful extensions: 21764
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21755
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
