Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001360A_C01 KMC001360A_c01
(926 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187741.2| hypothetical protein; protein id: At3g11330.1, ... 42 0.017
gb|AAG50968.1|AC073395_10 hypothetical protein; 91861-89496 [Ara... 42 0.017
pir||F86263 hypothetical protein F13K23.23 - Arabidopsis thalian... 41 0.023
ref|NP_563921.1| expressed protein; protein id: At1g12970.1, sup... 41 0.023
dbj|BAB01830.1| leucine-rich-repeat protein-like [Arabidopsis th... 40 0.038
>ref|NP_187741.2| hypothetical protein; protein id: At3g11330.1, supported by cDNA:
gi_18175637 [Arabidopsis thaliana]
gi|18175638|gb|AAL59901.1| unknown protein [Arabidopsis
thaliana] gi|21689861|gb|AAM67491.1| unknown protein
[Arabidopsis thaliana]
Length = 499
Score = 41.6 bits (96), Expect = 0.017
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = -1
Query: 926 IEEQQKNMVETQNQQAQTGWIAWGASLLNNVAGVTGSVAEYFGSRKAPRDPWFDQQL 756
+EE++K +E + +QA GW+ S L V+EY GS +PRDP+ ++QL
Sbjct: 447 LEEEEKKKMEEEMEQANAGWLTRTTSKLKT---YVADVSEYLGS-NSPRDPYLERQL 499
>gb|AAG50968.1|AC073395_10 hypothetical protein; 91861-89496 [Arabidopsis thaliana]
Length = 537
Score = 41.6 bits (96), Expect = 0.017
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = -1
Query: 926 IEEQQKNMVETQNQQAQTGWIAWGASLLNNVAGVTGSVAEYFGSRKAPRDPWFDQQL 756
+EE++K +E + +QA GW+ S L V+EY GS +PRDP+ ++QL
Sbjct: 485 LEEEEKKKMEEEMEQANAGWLTRTTSKLKT---YVADVSEYLGS-NSPRDPYLERQL 537
>pir||F86263 hypothetical protein F13K23.23 - Arabidopsis thaliana
gi|8698744|gb|AAF78502.1|AC012187_22 Contains similarity
to CYR1 from Candida albicans gb|AB034965 and contains
multiple Leucine Rich PF|00560 repeats. [Arabidopsis
thaliana]
Length = 492
Score = 41.2 bits (95), Expect = 0.023
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = -1
Query: 923 EEQQKNMVETQNQQA-QTGWIAWGASLLNNVAGVTGSVAEYFGSRKAPRDPWFDQQL 756
EEQ ++++E + QQ TGW++WG+S++ ++ S + G+ K P++ + D+QL
Sbjct: 440 EEQLRSVIEAEKQQGGATGWLSWGSSIVTSLF----SGGTHGGAAKKPKNSFLDEQL 492
>ref|NP_563921.1| expressed protein; protein id: At1g12970.1, supported by cDNA:
gi_17063164 [Arabidopsis thaliana]
gi|17063165|gb|AAL32979.1| At1g12970/F13K23_18
[Arabidopsis thaliana] gi|21700931|gb|AAM70589.1|
At1g12970/F13K23_18 [Arabidopsis thaliana]
Length = 464
Score = 41.2 bits (95), Expect = 0.023
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = -1
Query: 923 EEQQKNMVETQNQQA-QTGWIAWGASLLNNVAGVTGSVAEYFGSRKAPRDPWFDQQL 756
EEQ ++++E + QQ TGW++WG+S++ ++ S + G+ K P++ + D+QL
Sbjct: 412 EEQLRSVIEAEKQQGGATGWLSWGSSIVTSLF----SGGTHGGAAKKPKNSFLDEQL 464
>dbj|BAB01830.1| leucine-rich-repeat protein-like [Arabidopsis thaliana]
gi|26453000|dbj|BAC43576.1| unknown protein [Arabidopsis
thaliana]
Length = 471
Score = 40.4 bits (93), Expect = 0.038
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = -1
Query: 923 EEQQKNMVETQNQQAQTGWIAWGASLLNN-VAGVTGSV----AEYFGSRKAPRDPWFDQQ 759
E+QQ+ VE + + GW+ WG S++ N V+GVT ++ A G K P D +F Q
Sbjct: 411 EQQQRIGVEAERHGDENGWVYWGTSMVTNLVSGVTHTIGFGGATSDGGDKKPGDSYFYHQ 470
Query: 758 L 756
+
Sbjct: 471 I 471
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 751,917,833
Number of Sequences: 1393205
Number of extensions: 15697732
Number of successful extensions: 34907
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34838
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51305130920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
