Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001357A_C01 KMC001357A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_496450.1| Protein kinase [Caenorhabditis elegans] gi|7508... 33 3.2
pir||TVCTFF protein-tyrosine kinase (EC 2.7.1.112) fes/fps - cat 32 7.1
sp|P14238|FES_FELCA Proto-oncogene tyrosine-protein kinase FES/F... 32 7.1
ref|NP_010595.1| Gtpase-interacting component 2; Gic2p [Saccharo... 32 7.1
>ref|NP_496450.1| Protein kinase [Caenorhabditis elegans] gi|7508805|pir||T26093
hypothetical protein W02B12.12 - Caenorhabditis elegans
gi|4038519|emb|CAA91402.1| Hypothetical protein
W02B12.12 [Caenorhabditis elegans]
Length = 367
Score = 32.7 bits (73), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = +2
Query: 245 TYHQKWKYKPIKQNFCHFPKLSGHHSHQRGASETCK 352
T H + Y P K + H P S HH+H R S+ K
Sbjct: 41 TTHTRTSYMPSKSSQHHHPASSSHHNHHRKRSDATK 76
>pir||TVCTFF protein-tyrosine kinase (EC 2.7.1.112) fes/fps - cat
Length = 820
Score = 31.6 bits (70), Expect = 7.1
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Frame = +1
Query: 145 CQV*KLLCKYYRDEAMAPDKIIQYETNTN*IRCNLSPKMEIQAYKTEFLSLP*-----TI 309
C + ++L +Y ++ D+++ + P+ E Q + ++ S P T
Sbjct: 219 CILKEILQEYLEISSLVQDEVVAIHLEMAAAVARIQPEAEYQGFLRQYGSTPDVPPCVTF 278
Query: 310 RSPLTPTGRK*NMQELVEWRLNALTINFTVHLLPSLRTTFSASNKTILSR 459
L G EL +LN LT+ H L S+ + + +T+LSR
Sbjct: 279 DESLLEEGEPLEPGEL---QLNELTVESVQHTLTSVTDELTVATQTVLSR 325
>sp|P14238|FES_FELCA Proto-oncogene tyrosine-protein kinase FES/FPS (C-FES)
gi|163848|gb|AAA30808.1| c-fes/fps-encoded protein
Length = 820
Score = 31.6 bits (70), Expect = 7.1
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Frame = +1
Query: 145 CQV*KLLCKYYRDEAMAPDKIIQYETNTN*IRCNLSPKMEIQAYKTEFLSLP*-----TI 309
C + ++L +Y ++ D+++ + P+ E Q + ++ S P T
Sbjct: 219 CILKEILQEYLEISSLVQDEVVAIHLEMAAAVARIQPEAEYQGFLRQYGSTPDVPPCVTF 278
Query: 310 RSPLTPTGRK*NMQELVEWRLNALTINFTVHLLPSLRTTFSASNKTILSR 459
L G EL +LN LT+ H L S+ + + +T+LSR
Sbjct: 279 DESLLEEGEPLEPGEL---QLNELTVESVQHTLTSVTDELTVATQTVLSR 325
>ref|NP_010595.1| Gtpase-interacting component 2; Gic2p [Saccharomyces cerevisiae]
gi|21362566|sp|Q06648|GIC2_YEAST GTPase-interacting
component 2 gi|2131423|pir||S61195 hypothetical protein
YDR309c - yeast (Saccharomyces cerevisiae)
gi|849225|gb|AAB64745.1| Ydr309cp [Saccharomyces
cerevisiae]
Length = 383
Score = 31.6 bits (70), Expect = 7.1
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 KNGNTSL*NRISVTSLNYPVTTHTNGAQVKHARVSRVETKCTDNKFYS--ASSSKFKDHI 428
K S+ ISVTS NY T N + + RV T T YS AS +FK+
Sbjct: 208 KTSRLSVARSISVTSSNYSKNTQGNNHSI-NGRVVSTSTMATSIFEYSPNASPKQFKNKS 266
Query: 429 FCLQQNHLVTNCASSSQIIFD 491
L H TN SS+ D
Sbjct: 267 HAL--GHRYTNSTDSSESSLD 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,216,062
Number of Sequences: 1393205
Number of extensions: 10569608
Number of successful extensions: 24741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24732
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
