Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001355A_C01 KMC001355A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189058.1| type 1 membrane protein, putative; protein id: ... 80 2e-14
sp|O42602|CRF1_XENLA Corticotropin releasing factor receptor 1 p... 33 2.6
ref|XP_221488.1| similar to KIAA1524 protein [Homo sapiens] [Rat... 33 4.5
ref|NP_792411.1| yersiniabactin non-ribosomal peptide synthetase... 33 4.5
ref|NP_766204.1| expressed sequence AA408511 [Mus musculus] gi|2... 32 7.7
>ref|NP_189058.1| type 1 membrane protein, putative; protein id: At3g24160.1,
supported by cDNA: 12465., supported by cDNA:
gi_15450742, supported by cDNA: gi_4206764 [Arabidopsis
thaliana] gi|25456269|pir||T52336 probable type 1
membrane protein [imported] - Arabidopsis thaliana
gi|4206765|gb|AAD11797.1| putative type 1 membrane
protein [Arabidopsis thaliana]
gi|11994235|dbj|BAB01357.1| gene_id:MUJ8.6~unknown
protein [Arabidopsis thaliana]
gi|15450743|gb|AAK96643.1| AT3g24160/MUJ8_16
[Arabidopsis thaliana] gi|21537239|gb|AAM61580.1| type 1
membrane protein, putative [Arabidopsis thaliana]
gi|22137144|gb|AAM91417.1| AT3g24160/MUJ8_16
[Arabidopsis thaliana]
Length = 364
Score = 80.1 bits (196), Expect = 2e-14
Identities = 39/64 (60%), Positives = 53/64 (81%), Gaps = 2/64 (3%)
Frame = -3
Query: 639 TARWLEEIKALNATG--PELVLVRTTLAWITGIILLISTLLGICYLMNMPLTRDTLLYSN 466
+AR + E++ + + E++LVR TLAW+TGIILLI+T+LG+ +LMNMPLT+DTLLYSN
Sbjct: 301 SARSMVEVEGIPSAAIIAEVILVRLTLAWLTGIILLIATILGVYFLMNMPLTKDTLLYSN 360
Query: 465 VKLD 454
VKLD
Sbjct: 361 VKLD 364
>sp|O42602|CRF1_XENLA Corticotropin releasing factor receptor 1 precursor (CRF-R) (CRF1)
(Corticotropin-releasing hormone receptor 1) (CRH-R 1)
gi|2648053|emb|CAA74363.1| corticotropin releasing
factor receptor, type 1 [Xenopus laevis]
Length = 415
Score = 33.5 bits (75), Expect = 2.6
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Frame = -1
Query: 425 LLNQPRRTRLPLNPRLGV-FLLDASNLCALLYYCF*SLSYRPFTCTHNIVHWKFVQSGLS 249
+L Q ++T++ + + + FL + +LCALL L R C NI+HW + + +
Sbjct: 105 ILKQEKKTKVHYHIAIVINFLGHSISLCALLVAFILFLRLRSIRCLRNIIHWNLITAFIL 164
Query: 248 R 246
R
Sbjct: 165 R 165
>ref|XP_221488.1| similar to KIAA1524 protein [Homo sapiens] [Rattus norvegicus]
Length = 453
Score = 32.7 bits (73), Expect = 4.5
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = -2
Query: 289 TISCIGNLFNQD*VVFTVGDIIR*CSNVRHRYCTLLSGLAHLDLCPVICCVTLVSTAIYN 110
T+ C+G L N +V I+ SNV+ Y TL+S LAH L V+ ++++S+ N
Sbjct: 252 TMPCLGLLANLCRHNLSVQTQIKTLSNVKSFYRTLISFLAHSSLTVVVFALSILSSLTLN 311
>ref|NP_792411.1| yersiniabactin non-ribosomal peptide synthetase [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28853037|gb|AAO56106.1| yersiniabactin non-ribosomal
peptide synthetase [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 2057
Score = 32.7 bits (73), Expect = 4.5
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -1
Query: 512 TS*ICPSLGTRFSILMSSLIRQWKHPKTNLLNQPRRTRLPLNPRLGVFLLDASNLCALLY 333
T+ + P++ + L S+++ +W ++ LLN R PLNP + + D +N+ AL
Sbjct: 350 TAGVTPTMA--LATLFSAVLGRWSGQQSLLLNLTLFDRQPLNPAVASMIADFTNILALPV 407
Query: 332 YC 327
C
Sbjct: 408 SC 409
>ref|NP_766204.1| expressed sequence AA408511 [Mus musculus]
gi|26340084|dbj|BAC33705.1| unnamed protein product [Mus
musculus]
Length = 930
Score = 32.0 bits (71), Expect = 7.7
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = -2
Query: 289 TISCIGNLFNQD*VVFTVGDIIR*CSNVRHRYCTLLSGLAHLDLCPVICCVTLVSTAIYN 110
T+ C+G L N +V I+ SNV+ Y TL+S LAH L V+ ++++S N
Sbjct: 184 TMPCLGLLANLCRHNLSVQTQIKTLSNVKSFYRTLISFLAHSSLTVVVFALSILSRLTLN 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,375,861
Number of Sequences: 1393205
Number of extensions: 12788919
Number of successful extensions: 24465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24462
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
