Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001354A_C01 KMC001354A_c01
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S14181 DNA-directed RNA polymerase (EC 2.7.7.6) largest cha... 180 2e-44
pir||S14182 DNA-directed RNA polymerase (EC 2.7.7.6) largest cha... 180 2e-44
emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max] 180 2e-44
pir||S14183 DNA-directed RNA polymerase (EC 2.7.7.6) largest cha... 165 6e-40
pir||JDMU1 DNA-directed RNA polymerase (EC 2.7.7.6) II largest c... 139 4e-32
>pir||S14181 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform
B1) - soybean (fragment)
Length = 650
Score = 180 bits (456), Expect = 2e-44
Identities = 83/87 (95%), Positives = 86/87 (98%)
Frame = -2
Query: 675 SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG 496
SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG
Sbjct: 562 SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG 621
Query: 495 YSPSQPGYSPSSTSQYTPQTNDQDERG 415
YSPSQPGYSPSSTSQYTPQT+D+D+ G
Sbjct: 622 YSPSQPGYSPSSTSQYTPQTSDKDDGG 648
Score = 114 bits (284), Expect = 2e-24
Identities = 57/80 (71%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 458 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 517
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
GYSP+ P YSP+S S Y+P
Sbjct: 518 PGYSPTSPSYSPTSPS-YSP 536
Score = 113 bits (283), Expect = 2e-24
Identities = 57/82 (69%), Positives = 67/82 (81%), Gaps = 2/82 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 465 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 524
Query: 501 TGYSPSQPGYSPSSTSQYTPQT 436
YSP+ P YSP+S S Y PQ+
Sbjct: 525 PSYSPTSPSYSPTSPS-YNPQS 545
Score = 113 bits (282), Expect = 3e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSPTSP+YSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 451 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 510
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ PGYSP+S S Y+P
Sbjct: 511 PAYSPTSPGYSPTSPS-YSP 529
Score = 112 bits (281), Expect = 4e-24
Identities = 57/80 (71%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 402 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 461
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 462 PAYSPTSPAYSPTSPS-YSP 480
Score = 112 bits (279), Expect = 6e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 416 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 475
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 476 PSYSPTSPSYSPTSPS-YSP 494
Score = 112 bits (279), Expect = 6e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 409 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 468
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 469 PAYSPTSPSYSPTSPS-YSP 487
Score = 111 bits (277), Expect = 1e-23
Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSP YSPTSP+YSPSSP YSP+SP S SP YSP+SP +SP S
Sbjct: 374 SPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 433
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 434 PSYSPTSPSYSPTSPS-YSP 452
Score = 110 bits (276), Expect = 1e-23
Identities = 54/80 (67%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 472 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 531
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P Y+P S ++Y+P
Sbjct: 532 PSYSPTSPSYNPQS-AKYSP 550
Score = 110 bits (276), Expect = 1e-23
Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSP+SP YSPTSP YSPTSP YSP+SPTYSPSSP S SP YSP+SP +SP S
Sbjct: 367 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 426
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 427 PSYSPTSPSYSPTSPS-YSP 445
Score = 109 bits (272), Expect = 4e-23
Identities = 53/80 (66%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSP+YSPTSP+YSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 437 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 496
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S + Y+P
Sbjct: 497 PSYSPTSPSYSPTSPA-YSP 515
Score = 108 bits (271), Expect = 5e-23
Identities = 53/80 (66%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSP+SP YSPTSP+YSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 395 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 454
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S + Y+P
Sbjct: 455 PAYSPTSPAYSPTSPA-YSP 473
Score = 107 bits (267), Expect = 1e-22
Identities = 52/79 (65%), Positives = 62/79 (77%), Gaps = 1/79 (1%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPST 499
SP+SP YSPTSP+YSPTSP+YSPTSP YSP+SP+YSP+SP S SP Y+P S ++SPS
Sbjct: 493 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSL 552
Query: 498 GYSPSQPGYSPSSTSQYTP 442
YSPS P SPS S Y+P
Sbjct: 553 AYSPSSPRLSPS--SPYSP 569
Score = 100 bits (250), Expect = 1e-20
Identities = 51/78 (65%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
Frame = -2
Query: 669 SSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-STG 496
SSP YSP+SP YSP+SP YSPTSP YSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 362 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 421
Query: 495 YSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 422 YSPTSPSYSPTSPS-YSP 438
Score = 86.7 bits (213), Expect = 3e-16
Identities = 44/68 (64%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Frame = -2
Query: 639 YSPTS-PSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPST-GYSPSQPGYSP 466
+SPTS P YSP+SP YSPSSP YSP+SP S SP YSP+SP +SPS+ GYSP+ P YSP
Sbjct: 358 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 417
Query: 465 SSTSQYTP 442
+S S Y+P
Sbjct: 418 TSPS-YSP 424
Score = 57.8 bits (138), Expect = 1e-07
Identities = 42/85 (49%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Frame = -2
Query: 675 SPSSPYSPTSPNYSPTSPSYSPT--SPSYSP-SSPTYSPSSPYNSGVSPD---YSPSSPQ 514
SPS SP T +SP ++SP SSP YSPSSP G SP YSP+SP
Sbjct: 330 SPSYLLSPNLRLSPTTDAQFSPYVGGMAFSPTSSPGYSPSSP---GYSPSSPGYSPTSPG 386
Query: 513 FSP-STGYSPSQPGYSPSSTSQYTP 442
+SP S GYSP+ P YSPSS Y+P
Sbjct: 387 YSPTSPGYSPTSPTYSPSSPG-YSP 410
Score = 51.6 bits (122), Expect = 1e-05
Identities = 37/77 (48%), Positives = 47/77 (60%), Gaps = 2/77 (2%)
Frame = -2
Query: 666 SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSP-SSPQFSPST-GY 493
SP S T + SPSY SP+ S T + SPY G++ +SP SSP +SPS+ GY
Sbjct: 317 SPISGTPYHEGLMSPSYL-LSPNLRLSPTTDAQFSPYVGGMA--FSPTSSPGYSPSSPGY 373
Query: 492 SPSQPGYSPSSTSQYTP 442
SPS PGYSP+S Y+P
Sbjct: 374 SPSSPGYSPTSPG-YSP 389
>pir||S14182 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform
B2) - soybean (fragment)
Length = 491
Score = 180 bits (456), Expect = 2e-44
Identities = 83/87 (95%), Positives = 86/87 (98%)
Frame = -2
Query: 675 SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG 496
SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG
Sbjct: 403 SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG 462
Query: 495 YSPSQPGYSPSSTSQYTPQTNDQDERG 415
YSPSQPGYSPSSTSQYTPQT+D+D+ G
Sbjct: 463 YSPSQPGYSPSSTSQYTPQTSDKDDGG 489
Score = 114 bits (284), Expect = 2e-24
Identities = 57/80 (71%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 299 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 358
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
GYSP+ P YSP+S S Y+P
Sbjct: 359 PGYSPTSPSYSPTSPS-YSP 377
Score = 113 bits (282), Expect = 3e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSPTSP+YSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 292 SPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 351
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ PGYSP+S S Y+P
Sbjct: 352 PAYSPTSPGYSPTSPS-YSP 370
Score = 112 bits (281), Expect = 4e-24
Identities = 57/80 (71%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 250 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 309
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 310 PAYSPTSPSYSPTSPS-YSP 328
Score = 112 bits (281), Expect = 4e-24
Identities = 56/80 (70%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 271 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 330
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 331 PSYSPTSPSYSPTSPS-YSP 349
Score = 112 bits (280), Expect = 5e-24
Identities = 57/80 (71%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSP YSPTSP YSP+SPTYSPSSP S SP YSP+SP +SP S
Sbjct: 215 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 274
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 275 PSYSPTSPSYSPTSPS-YSP 293
Score = 112 bits (280), Expect = 5e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 264 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTS 323
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 324 PSYSPTSPSYSPTSPS-YSP 342
Score = 112 bits (279), Expect = 6e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 257 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 316
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 317 PSYSPTSPSYSPTSPS-YSP 335
Score = 110 bits (276), Expect = 1e-23
Identities = 54/80 (67%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 313 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 372
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P Y+P S ++Y+P
Sbjct: 373 PSYSPTSPSYNPQS-AKYSP 391
Score = 110 bits (274), Expect = 2e-23
Identities = 54/80 (67%), Positives = 65/80 (80%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSP+SP YSPTSP+YSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 243 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 302
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 303 PAYSPTSPAYSPTSPS-YSP 321
Score = 107 bits (267), Expect = 1e-22
Identities = 52/79 (65%), Positives = 62/79 (77%), Gaps = 1/79 (1%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPST 499
SP+SP YSPTSP+YSPTSP+YSPTSP YSP+SP+YSP+SP S SP Y+P S ++SPS
Sbjct: 334 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSL 393
Query: 498 GYSPSQPGYSPSSTSQYTP 442
YSPS P SPS S Y+P
Sbjct: 394 AYSPSSPRLSPS--SPYSP 410
Score = 107 bits (267), Expect = 1e-22
Identities = 52/80 (65%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSP+SP YSPTSP+YSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 236 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 295
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S + Y+P
Sbjct: 296 PSYSPTSPAYSPTSPA-YSP 314
Score = 106 bits (265), Expect = 3e-22
Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSP+SP YSPTSP YSPTSP YSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 208 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 267
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 268 PSYSPTSPSYSPTSPS-YSP 286
Score = 102 bits (253), Expect = 6e-21
Identities = 52/78 (66%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
Frame = -2
Query: 669 SSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-STG 496
SSP YSP+SP YSP+SP YSPTSP YSP+SP YSP+SP S SP YSPSSP +SP S
Sbjct: 203 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 262
Query: 495 YSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 263 YSPTSPSYSPTSPS-YSP 279
Score = 85.9 bits (211), Expect = 5e-16
Identities = 50/90 (55%), Positives = 59/90 (65%), Gaps = 12/90 (13%)
Frame = -2
Query: 675 SPSSPYSPTSPN----------YSPTS-PSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYS 529
SP+ SPTS +SPTS P YSP+SP YSPSSP YSP+SP S SP YS
Sbjct: 177 SPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 236
Query: 528 PSSPQFSP-STGYSPSQPGYSPSSTSQYTP 442
P+SP +SP S YSPS PGYSP+S + Y+P
Sbjct: 237 PTSPGYSPTSPTYSPSSPGYSPTSPA-YSP 265
Score = 60.8 bits (146), Expect = 2e-08
Identities = 45/87 (51%), Positives = 56/87 (63%), Gaps = 10/87 (11%)
Frame = -2
Query: 666 SPYSPTSPNY--SPTSPS-YSPT--SPSYSP-SSPTYSPSSPYNSGVSPD---YSPSSPQ 514
SP SPN SPTS + +SP ++SP SSP YSPSSP G SP YSP+SP
Sbjct: 171 SPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSP---GYSPSSPGYSPTSPG 227
Query: 513 FSP-STGYSPSQPGYSPSSTSQYTPQT 436
+SP S GYSP+ PGYSP+S + Y+P +
Sbjct: 228 YSPTSPGYSPTSPGYSPTSPT-YSPSS 253
>emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max]
Length = 494
Score = 180 bits (456), Expect = 2e-44
Identities = 83/87 (95%), Positives = 86/87 (98%)
Frame = -2
Query: 675 SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG 496
SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG
Sbjct: 406 SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG 465
Query: 495 YSPSQPGYSPSSTSQYTPQTNDQDERG 415
YSPSQPGYSPSSTSQYTPQT+D+D+ G
Sbjct: 466 YSPSQPGYSPSSTSQYTPQTSDKDDGG 492
Score = 114 bits (284), Expect = 2e-24
Identities = 57/80 (71%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 302 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 361
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
GYSP+ P YSP+S S Y+P
Sbjct: 362 PGYSPTSPSYSPTSPS-YSP 380
Score = 113 bits (282), Expect = 3e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSPTSP+YSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 295 SPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 354
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ PGYSP+S S Y+P
Sbjct: 355 PAYSPTSPGYSPTSPS-YSP 373
Score = 112 bits (281), Expect = 4e-24
Identities = 57/80 (71%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 253 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 312
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 313 PAYSPTSPSYSPTSPS-YSP 331
Score = 112 bits (281), Expect = 4e-24
Identities = 56/80 (70%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 274 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 333
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 334 PSYSPTSPSYSPTSPS-YSP 352
Score = 112 bits (280), Expect = 5e-24
Identities = 57/80 (71%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSP YSPTSP YSP+SPTYSPSSP S SP YSP+SP +SP S
Sbjct: 218 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 277
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 278 PSYSPTSPSYSPTSPS-YSP 296
Score = 112 bits (280), Expect = 5e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 267 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTS 326
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 327 PSYSPTSPSYSPTSPS-YSP 345
Score = 112 bits (279), Expect = 6e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 260 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 319
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 320 PSYSPTSPSYSPTSPS-YSP 338
Score = 110 bits (276), Expect = 1e-23
Identities = 54/80 (67%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 316 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 375
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P Y+P S ++Y+P
Sbjct: 376 PSYSPTSPSYNPQS-AKYSP 394
Score = 110 bits (274), Expect = 2e-23
Identities = 54/80 (67%), Positives = 65/80 (80%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSP+SP YSPTSP+YSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 246 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 305
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 306 PAYSPTSPAYSPTSPS-YSP 324
Score = 107 bits (267), Expect = 1e-22
Identities = 52/79 (65%), Positives = 62/79 (77%), Gaps = 1/79 (1%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPST 499
SP+SP YSPTSP+YSPTSP+YSPTSP YSP+SP+YSP+SP S SP Y+P S ++SPS
Sbjct: 337 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSL 396
Query: 498 GYSPSQPGYSPSSTSQYTP 442
YSPS P SPS S Y+P
Sbjct: 397 AYSPSSPRLSPS--SPYSP 413
Score = 107 bits (267), Expect = 1e-22
Identities = 52/80 (65%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSP+SP YSPTSP+YSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 239 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 298
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S + Y+P
Sbjct: 299 PSYSPTSPAYSPTSPA-YSP 317
Score = 106 bits (265), Expect = 3e-22
Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSP+SP YSPTSP YSPTSP YSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 211 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 270
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 271 PSYSPTSPSYSPTSPS-YSP 289
Score = 102 bits (253), Expect = 6e-21
Identities = 52/78 (66%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
Frame = -2
Query: 669 SSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-STG 496
SSP YSP+SP YSP+SP YSPTSP YSP+SP YSP+SP S SP YSPSSP +SP S
Sbjct: 206 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 265
Query: 495 YSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 266 YSPTSPSYSPTSPS-YSP 282
Score = 85.9 bits (211), Expect = 5e-16
Identities = 50/90 (55%), Positives = 59/90 (65%), Gaps = 12/90 (13%)
Frame = -2
Query: 675 SPSSPYSPTSPN----------YSPTS-PSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYS 529
SP+ SPTS +SPTS P YSP+SP YSPSSP YSP+SP S SP YS
Sbjct: 180 SPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 239
Query: 528 PSSPQFSP-STGYSPSQPGYSPSSTSQYTP 442
P+SP +SP S YSPS PGYSP+S + Y+P
Sbjct: 240 PTSPGYSPTSPTYSPSSPGYSPTSPA-YSP 268
Score = 60.8 bits (146), Expect = 2e-08
Identities = 45/87 (51%), Positives = 56/87 (63%), Gaps = 10/87 (11%)
Frame = -2
Query: 666 SPYSPTSPNY--SPTSPS-YSPT--SPSYSP-SSPTYSPSSPYNSGVSPD---YSPSSPQ 514
SP SPN SPTS + +SP ++SP SSP YSPSSP G SP YSP+SP
Sbjct: 174 SPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSP---GYSPSSPGYSPTSPG 230
Query: 513 FSP-STGYSPSQPGYSPSSTSQYTPQT 436
+SP S GYSP+ PGYSP+S + Y+P +
Sbjct: 231 YSPTSPGYSPTSPGYSPTSPT-YSPSS 256
>pir||S14183 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform C) -
soybean (fragment) gi|18736|emb|CAA36736.1| DNA-directed
RNA polymerase [Glycine max]
Length = 977
Score = 165 bits (417), Expect = 6e-40
Identities = 79/86 (91%), Positives = 82/86 (94%), Gaps = 1/86 (1%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPST 499
SPSSP SPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSP+SPQFSPS
Sbjct: 892 SPSSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPTSPQFSPSA 951
Query: 498 GYSPSQPGYSPSSTSQYTPQTNDQDE 421
GYSPSQPGYSPSSTSQ TPQT+D+DE
Sbjct: 952 GYSPSQPGYSPSSTSQDTPQTSDKDE 977
Score = 107 bits (268), Expect = 1e-22
Identities = 55/80 (68%), Positives = 62/80 (76%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSP YSPTSP+YSPSSP YSP+SP S SP YSP+SP +SP S
Sbjct: 739 SPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTS 798
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YS + P YSP+S S Y+P
Sbjct: 799 PAYSSTSPAYSPTSPS-YSP 817
Score = 107 bits (267), Expect = 1e-22
Identities = 53/81 (65%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Frame = -2
Query: 675 SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-ST 499
S S YSPTSP+YSPTSP+YSPTSPSYS +SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 803 STSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 862
Query: 498 GYSPSQPGYSPSSTSQYTPQT 436
YSP+ P YSP+S S Y PQ+
Sbjct: 863 SYSPTSPSYSPTSPS-YNPQS 882
Score = 106 bits (265), Expect = 3e-22
Identities = 54/80 (67%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YS TSP+YSPTSPSYSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 788 SPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTS 847
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 848 PSYSPTSPAYSPTSPS-YSP 866
Score = 106 bits (265), Expect = 3e-22
Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSP+SP YSPTSP YSPTSP YSP+SPTYSPSSP S SP YSP+SP +SP S
Sbjct: 732 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 791
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YS S++ Y+P
Sbjct: 792 PAYSPTSPAYS-STSPAYSP 810
Score = 105 bits (263), Expect = 4e-22
Identities = 53/80 (66%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSP+SP YSPTSP+YSPTSPSYSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 760 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTS 819
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YS +S S Y+P
Sbjct: 820 PAYSPTSPSYSLTSPS-YSP 838
Score = 101 bits (252), Expect = 8e-21
Identities = 52/82 (63%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YS TSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 816 SPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTS 875
Query: 501 TGYSPSQPGYSPSSTSQYTPQT 436
Y+P YSPS Y+P +
Sbjct: 876 PSYNPQSAKYSPSLA--YSPSS 895
Score = 99.4 bits (246), Expect = 4e-20
Identities = 49/75 (65%), Positives = 57/75 (75%), Gaps = 3/75 (4%)
Frame = -2
Query: 675 SPSSP--YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP- 505
SPSS YSP+SP YSP+SP YSPTSP YSP+SP YSP+SP S SP YSP+SP +SP
Sbjct: 724 SPSSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 783
Query: 504 STGYSPSQPGYSPSS 460
S YSP+ P YSP+S
Sbjct: 784 SPSYSPTSPAYSPTS 798
Score = 85.5 bits (210), Expect = 6e-16
Identities = 44/76 (57%), Positives = 53/76 (68%), Gaps = 1/76 (1%)
Frame = -2
Query: 666 SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPST-GYS 490
SPY +SP YSP+SP YSPSSP YSP+SP S SP YSP+SP +SPS+ GYS
Sbjct: 715 SPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 774
Query: 489 PSQPGYSPSSTSQYTP 442
P+ P YSP+S S Y+P
Sbjct: 775 PTSPAYSPTSPS-YSP 789
Score = 63.5 bits (153), Expect = 2e-09
Identities = 42/82 (51%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Frame = -2
Query: 666 SPYSPTSPNYSPTSPSYSPTSP-----SYSPSS-PTYSPSSPYNSGVSPDYSPSSPQFSP 505
SP SPN + S + SP ++SPSS P YSPSSP S SP YSP+SP +SP
Sbjct: 695 SPSYLLSPNLRLSPSSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYSP 754
Query: 504 -STGYSPSQPGYSPSSTSQYTP 442
S GYSP+ P YSPSS Y+P
Sbjct: 755 TSPGYSPTSPTYSPSSPG-YSP 775
>pir||JDMU1 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain -
Arabidopsis thaliana
Length = 1834
Score = 139 bits (350), Expect = 4e-32
Identities = 65/86 (75%), Positives = 72/86 (83%)
Frame = -2
Query: 675 SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTG 496
SP+SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPY+SG SPDYSPS+ G
Sbjct: 1742 SPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSA-------G 1794
Query: 495 YSPSQPGYSPSSTSQYTPQTNDQDER 418
YSP+ PGYSPSST QYTP D+ ++
Sbjct: 1795 YSPTLPGYSPSSTGQYTPHEGDKKDK 1820
Score = 114 bits (284), Expect = 2e-24
Identities = 58/88 (65%), Positives = 67/88 (75%), Gaps = 8/88 (9%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 1638 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1697
Query: 501 TGYSPSQPGYSPSSTS------QYTPQT 436
GYSP+ P YSP+S S Y PQ+
Sbjct: 1698 PGYSPTSPSYSPTSPSYGPTSPSYNPQS 1725
Score = 113 bits (282), Expect = 3e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSPTSP+YSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 1631 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1690
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ PGYSP+S S Y+P
Sbjct: 1691 PAYSPTSPGYSPTSPS-YSP 1709
Score = 112 bits (281), Expect = 4e-24
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 1582 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1641
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 1642 PAYSPTSPAYSPTSPS-YSP 1660
Score = 112 bits (280), Expect = 5e-24
Identities = 57/80 (71%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSP YSPTSP YSP+SPTYSPSSP S SP YSP+SP +SP S
Sbjct: 1540 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1599
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 1600 PSYSPTSPSYSPTSPS-YSP 1618
Score = 112 bits (279), Expect = 6e-24
Identities = 56/80 (70%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP YSP+SP S SP YSP+SP +SP S
Sbjct: 1603 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1662
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S S Y+P
Sbjct: 1663 PSYSPTSPSYSPTSPS-YSP 1681
Score = 112 bits (279), Expect = 6e-24
Identities = 56/80 (70%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SPSSP YSPTSP YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 1575 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1634
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S + Y+P
Sbjct: 1635 PAYSPTSPAYSPTSPA-YSP 1653
Score = 109 bits (272), Expect = 4e-23
Identities = 53/80 (66%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 1652 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1711
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
Y P+ P Y+P S ++Y+P
Sbjct: 1712 PSYGPTSPSYNPQS-AKYSP 1730
Score = 108 bits (271), Expect = 5e-23
Identities = 53/80 (66%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSP+SP YSPTSP+YSPTSPSYSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 1568 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1627
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S + Y+P
Sbjct: 1628 PSYSPTSPAYSPTSPA-YSP 1646
Score = 107 bits (267), Expect = 1e-22
Identities = 52/80 (65%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP-S 502
SP+SP YSPTSP YSP+SP YSPTSP+YSP+SP+YSP+SP S SP YSP+SP +SP S
Sbjct: 1561 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1620
Query: 501 TGYSPSQPGYSPSSTSQYTP 442
YSP+ P YSP+S + Y+P
Sbjct: 1621 PSYSPTSPSYSPTSPA-YSP 1639
Score = 103 bits (256), Expect = 3e-21
Identities = 53/81 (65%), Positives = 61/81 (74%), Gaps = 3/81 (3%)
Frame = -2
Query: 675 SPSSP--YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSP- 505
SPSS YSP+SP YSPTSP YSPTSP YSP+SP YSP+SP S SP YSP+SP +SP
Sbjct: 1532 SPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1591
Query: 504 STGYSPSQPGYSPSSTSQYTP 442
S YSP+ P YSP+S S Y+P
Sbjct: 1592 SPSYSPTSPSYSPTSPS-YSP 1611
Score = 100 bits (250), Expect = 1e-20
Identities = 53/99 (53%), Positives = 65/99 (65%), Gaps = 21/99 (21%)
Frame = -2
Query: 675 SPSSP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQF---- 511
SP+SP YSPTSP+YSPTSPSYSPTSP+YSP+SP YSP+SP S SP Y P+SP +
Sbjct: 1666 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQS 1725
Query: 510 ----------------SPSTGYSPSQPGYSPSSTSQYTP 442
SP++ YSP+ P YSP+S S Y+P
Sbjct: 1726 AKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPS-YSP 1763
Score = 84.3 bits (207), Expect = 1e-15
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = -2
Query: 666 SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPST-GYS 490
SPY +SP YSP+SP YSP+SP YSP+SP S SP YSP+SP +SPS+ GYS
Sbjct: 1523 SPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1582
Query: 489 PSQPGYSPSSTSQYTP 442
P+ P YSP+S S Y+P
Sbjct: 1583 PTSPAYSPTSPS-YSP 1597
Score = 47.8 bits (112), Expect = 1e-04
Identities = 34/77 (44%), Positives = 47/77 (60%), Gaps = 2/77 (2%)
Frame = -2
Query: 666 SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSS-PQFSPST-GY 493
SP S T + SP+Y SP+ S + + SPY G++ +SPSS P +SPS+ GY
Sbjct: 1490 SPVSGTPYHEGMMSPNYL-LSPNMRLSPMSDAQFSPYVGGMA--FSPSSSPGYSPSSPGY 1546
Query: 492 SPSQPGYSPSSTSQYTP 442
SP+ PGYSP+S Y+P
Sbjct: 1547 SPTSPGYSPTSPG-YSP 1562
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,035,475
Number of Sequences: 1393205
Number of extensions: 14202510
Number of successful extensions: 105175
Number of sequences better than 10.0: 2666
Number of HSP's better than 10.0 without gapping: 52689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81280
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
