Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001353A_C01 KMC001353A_c01
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192235.2| putative protein phosphatase regulatory subunit... 55 8e-07
pir||D85041 hypothetical protein AT4g03260 [imported] - Arabidop... 55 8e-07
gb|AAO00823.1| putative protein phosphatase regulatory subunit [... 55 8e-07
ref|NP_477347.1| CG4602-PA [Drosophila melanogaster] gi|7297571|... 36 0.52
gb|AAC32822.3| splicing factor SRp54 [Drosophila melanogaster] 36 0.52
>ref|NP_192235.2| putative protein phosphatase regulatory subunit; protein id:
At4g03260.1 [Arabidopsis thaliana]
Length = 662
Score = 55.1 bits (131), Expect = 8e-07
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Frame = -1
Query: 599 RLGTN----DRSLRVDRK-TTRKGSHGVAAARRPPSTSTHSHRSQTVESPKLSKGKQSHL 435
RLGT+ DR LR + K ++RK SHG +++ +P S++ + K SK ++S L
Sbjct: 563 RLGTSTHQLDRGLRSELKNSSRKSSHGASSSHKPGSSTAR----KAPALQKRSKERRSRL 618
Query: 434 PPIRTKVSTQS--RHYLDAQSKVLNLTSGHSMRKSRSEGTLGAL 309
PP+ K+S + +++ ++ +L + SMR+SRSEGTLG +
Sbjct: 619 PPVGHKLSPAAYENYHVATGDRLSSLRTELSMRRSRSEGTLGPI 662
>pir||D85041 hypothetical protein AT4g03260 [imported] - Arabidopsis thaliana
gi|4262154|gb|AAD14454.1| putative protein phosphatase
regulatory subunit [Arabidopsis thaliana]
gi|7270196|emb|CAB77811.1| putative protein phosphatase
regulatory subunit [Arabidopsis thaliana]
Length = 473
Score = 55.1 bits (131), Expect = 8e-07
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Frame = -1
Query: 599 RLGTN----DRSLRVDRK-TTRKGSHGVAAARRPPSTSTHSHRSQTVESPKLSKGKQSHL 435
RLGT+ DR LR + K ++RK SHG +++ +P S++ + K SK ++S L
Sbjct: 374 RLGTSTHQLDRGLRSELKNSSRKSSHGASSSHKPGSSTAR----KAPALQKRSKERRSRL 429
Query: 434 PPIRTKVSTQS--RHYLDAQSKVLNLTSGHSMRKSRSEGTLGAL 309
PP+ K+S + +++ ++ +L + SMR+SRSEGTLG +
Sbjct: 430 PPVGHKLSPAAYENYHVATGDRLSSLRTELSMRRSRSEGTLGPI 473
>gb|AAO00823.1| putative protein phosphatase regulatory subunit [Arabidopsis
thaliana]
Length = 677
Score = 55.1 bits (131), Expect = 8e-07
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Frame = -1
Query: 599 RLGTN----DRSLRVDRK-TTRKGSHGVAAARRPPSTSTHSHRSQTVESPKLSKGKQSHL 435
RLGT+ DR LR + K ++RK SHG +++ +P S++ + K SK ++S L
Sbjct: 578 RLGTSTHQLDRGLRSELKNSSRKSSHGASSSHKPGSSTAR----KAPALQKRSKERRSRL 633
Query: 434 PPIRTKVSTQS--RHYLDAQSKVLNLTSGHSMRKSRSEGTLGAL 309
PP+ K+S + +++ ++ +L + SMR+SRSEGTLG +
Sbjct: 634 PPVGHKLSPAAYENYHVATGDRLSSLRTELSMRRSRSEGTLGPI 677
>ref|NP_477347.1| CG4602-PA [Drosophila melanogaster] gi|7297571|gb|AAF52825.1|
CG4602-PA [Drosophila melanogaster]
gi|17862472|gb|AAL39713.1| LD29830p [Drosophila
melanogaster]
Length = 513
Score = 35.8 bits (81), Expect = 0.52
Identities = 26/92 (28%), Positives = 39/92 (42%)
Frame = -1
Query: 599 RLGTNDRSLRVDRKTTRKGSHGVAAARRPPSTSTHSHRSQTVESPKLSKGKQSHLPPIRT 420
R + RS DR+T+R SH + RR + + RS V + S+ + H R+
Sbjct: 284 RRRSRSRSRSRDRRTSRSRSHRSTSRRRSRRSGSRERRS--VSRSRRSRSRGKHSSRSRS 341
Query: 419 KVSTQSRHYLDAQSKVLNLTSGHSMRKSRSEG 324
K S ++S+ G R SRS G
Sbjct: 342 KRSRSRHRRSSSRSRRSRSRGGKHSRSSRSRG 373
>gb|AAC32822.3| splicing factor SRp54 [Drosophila melanogaster]
Length = 513
Score = 35.8 bits (81), Expect = 0.52
Identities = 26/92 (28%), Positives = 39/92 (42%)
Frame = -1
Query: 599 RLGTNDRSLRVDRKTTRKGSHGVAAARRPPSTSTHSHRSQTVESPKLSKGKQSHLPPIRT 420
R + RS DR+T+R SH + RR + + RS V + S+ + H R+
Sbjct: 284 RRRSRSRSRSRDRRTSRSRSHRSTSRRRSRRSGSRERRS--VSRSRRSRSRGKHSSRSRS 341
Query: 419 KVSTQSRHYLDAQSKVLNLTSGHSMRKSRSEG 324
K S ++S+ G R SRS G
Sbjct: 342 KRSRSRHRRSSSRSRRSRSRGGKHSRSSRSRG 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,460,578
Number of Sequences: 1393205
Number of extensions: 12346675
Number of successful extensions: 37367
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 35829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37299
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
