Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001350A_C02 KMC001350A_c02
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC22513.1| homoeobox leucine-zipper protein [Zinnia elegans] 224 1e-57
emb|CAC84906.1| HD-Zip protein [Zinnia elegans] 223 2e-57
dbj|BAC22514.1| homeobox leucine-zipper protein [Zinnia elegans] 218 5e-56
emb|CAC84277.1| HD-Zip protein [Zinnia elegans] 218 5e-56
ref|NP_200877.1| HD-Zip transcription factor, Revoluta/Interfasc... 207 9e-53
>dbj|BAC22513.1| homoeobox leucine-zipper protein [Zinnia elegans]
Length = 846
Score = 224 bits (570), Expect = 1e-57
Identities = 106/134 (79%), Positives = 120/134 (89%)
Frame = -3
Query: 636 YYLGTGLLRSDSLVGDLVLKHLWHHQDAILCCSLKSVPMFIFANQAGLDMLETTLVALQD 457
Y+LGT LL S S+VGD +LK LW HQDAILCCSLKS P+FIFANQAGLDMLETT VALQD
Sbjct: 713 YHLGTDLLTSGSVVGDSLLKDLWQHQDAILCCSLKSPPVFIFANQAGLDMLETTFVALQD 772
Query: 456 ITLDKIFDESGRKALFADFAKLMQQGFAYLPAGICMSTMGRHVSYEQVIAWKVLAEEDNS 277
ITLDK+FDE+GRKALF +FAK+MQQG+AYLP GICMSTMGRH+SYEQ IAWKVLA ++ +
Sbjct: 773 ITLDKMFDEAGRKALFPEFAKIMQQGYAYLPGGICMSTMGRHISYEQAIAWKVLAGDETT 832
Query: 276 VHCLAFSFINWSFV 235
VH LAFSF+NWSFV
Sbjct: 833 VHRLAFSFVNWSFV 846
>emb|CAC84906.1| HD-Zip protein [Zinnia elegans]
Length = 835
Score = 223 bits (568), Expect = 2e-57
Identities = 103/134 (76%), Positives = 121/134 (89%)
Frame = -3
Query: 636 YYLGTGLLRSDSLVGDLVLKHLWHHQDAILCCSLKSVPMFIFANQAGLDMLETTLVALQD 457
Y+LG LL S SLVGD +LK LW HQDAILCCSLKS+P+F FANQAGLDMLETTLV+LQD
Sbjct: 702 YHLGADLLSSGSLVGDSLLKDLWQHQDAILCCSLKSLPVFTFANQAGLDMLETTLVSLQD 761
Query: 456 ITLDKIFDESGRKALFADFAKLMQQGFAYLPAGICMSTMGRHVSYEQVIAWKVLAEEDNS 277
ITLDKIFD+SGRKAL +FAK+MQQG+A+LP GICMSTMGRH++YEQ +AWKVLA ++++
Sbjct: 762 ITLDKIFDDSGRKALVPEFAKIMQQGYAHLPGGICMSTMGRHITYEQAVAWKVLAADEST 821
Query: 276 VHCLAFSFINWSFV 235
VHCLAFSF+NWSFV
Sbjct: 822 VHCLAFSFVNWSFV 835
>dbj|BAC22514.1| homeobox leucine-zipper protein [Zinnia elegans]
Length = 848
Score = 218 bits (555), Expect = 5e-56
Identities = 100/134 (74%), Positives = 121/134 (89%)
Frame = -3
Query: 636 YYLGTGLLRSDSLVGDLVLKHLWHHQDAILCCSLKSVPMFIFANQAGLDMLETTLVALQD 457
Y+LG LL S S+VG+ +LK LW HQDAILCCSLKS P+FIFANQ+GLDMLETTLV+LQD
Sbjct: 715 YHLGADLLSSGSVVGESLLKDLWQHQDAILCCSLKSQPVFIFANQSGLDMLETTLVSLQD 774
Query: 456 ITLDKIFDESGRKALFADFAKLMQQGFAYLPAGICMSTMGRHVSYEQVIAWKVLAEEDNS 277
ITLDK+FD+SGRKAL +FAK+MQQG+A+LP GICMSTMGRHV+YEQ +AWKVLA ++++
Sbjct: 775 ITLDKMFDDSGRKALVPEFAKIMQQGYAHLPGGICMSTMGRHVTYEQAVAWKVLAADEST 834
Query: 276 VHCLAFSFINWSFV 235
VHCLAFSF+NWSF+
Sbjct: 835 VHCLAFSFVNWSFL 848
>emb|CAC84277.1| HD-Zip protein [Zinnia elegans]
Length = 849
Score = 218 bits (555), Expect = 5e-56
Identities = 100/134 (74%), Positives = 121/134 (89%)
Frame = -3
Query: 636 YYLGTGLLRSDSLVGDLVLKHLWHHQDAILCCSLKSVPMFIFANQAGLDMLETTLVALQD 457
Y+LG LL S S+VG+ +LK LW HQDAILCCSLKS P+FIFANQ+GLDMLETTLV+LQD
Sbjct: 716 YHLGADLLSSGSVVGESLLKDLWQHQDAILCCSLKSQPVFIFANQSGLDMLETTLVSLQD 775
Query: 456 ITLDKIFDESGRKALFADFAKLMQQGFAYLPAGICMSTMGRHVSYEQVIAWKVLAEEDNS 277
ITLDK+FD+SGRKAL +FAK+MQQG+A+LP GICMSTMGRHV+YEQ +AWKVLA ++++
Sbjct: 776 ITLDKMFDDSGRKALVPEFAKIMQQGYAHLPGGICMSTMGRHVTYEQAVAWKVLAADEST 835
Query: 276 VHCLAFSFINWSFV 235
VHCLAFSF+NWSF+
Sbjct: 836 VHCLAFSFVNWSFL 849
>ref|NP_200877.1| HD-Zip transcription factor, Revoluta/Interfascicular fiberless 1;
protein id: At5g60690.1, supported by cDNA: gi_6524952,
supported by cDNA: gi_7229678 [Arabidopsis thaliana]
gi|7229679|gb|AAF42938.1|AF233592_1 REVOLUTA [Arabidopsis
thaliana] gi|9759333|dbj|BAB09842.1| Revoluta
[Arabidopsis thaliana]
gi|24416437|gb|AAF15262.2|AF188994_1 homeodomain-leucine
zipper protein interfascicular fiberless 1 [Arabidopsis
thaliana] gi|27413560|gb|AAO11835.1| homeodomain-leucine
zipper protein [Arabidopsis thaliana]
Length = 842
Score = 207 bits (527), Expect = 9e-53
Identities = 104/138 (75%), Positives = 119/138 (85%), Gaps = 4/138 (2%)
Frame = -3
Query: 636 YYLGTGLLRSDSLVGD-LVLKHLWHHQDAILCCSLKSVPMFIFANQAGLDMLETTLVALQ 460
++LG+ LL DSL D VLK LW HQDAILCCSLK P+F+FANQAGLDMLETTLVALQ
Sbjct: 705 HHLGSELLTIDSLGSDDSVLKLLWDHQDAILCCSLKPQPVFMFANQAGLDMLETTLVALQ 764
Query: 459 DITLDKIFDESGRKALFADFAKLMQQGFAYLPAGICMSTMGRHVSYEQVIAWKVLA---E 289
DITL+KIFDESGRKA+ +DFAKLMQQGFA LP+GIC+STMGRHVSYEQ +AWKV A E
Sbjct: 765 DITLEKIFDESGRKAICSDFAKLMQQGFACLPSGICVSTMGRHVSYEQAVAWKVFAASEE 824
Query: 288 EDNSVHCLAFSFINWSFV 235
+N++HCLAFSF+NWSFV
Sbjct: 825 NNNNLHCLAFSFVNWSFV 842
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,689,002
Number of Sequences: 1393205
Number of extensions: 12062280
Number of successful extensions: 24580
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 23884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24557
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
