Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001348A_C02 KMC001348A_c02
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190388.1| putative protein; protein id: At3g48050.1 [Arab... 131 7e-30
emb|CAC69851.1| hypothetical protein [Nicotiana tabacum] 130 1e-29
ref|NP_190389.1| putative protein; protein id: At3g48060.1 [Arab... 119 2e-26
gb|EAA04786.1| ebiP3712 [Anopheles gambiae str. PEST] 36 0.40
ref|ZP_00090204.1| hypothetical protein [Azotobacter vinelandii] 33 2.0
>ref|NP_190388.1| putative protein; protein id: At3g48050.1 [Arabidopsis thaliana]
gi|7487129|pir||T06678 hypothetical protein T17F15.80 -
Arabidopsis thaliana gi|4678323|emb|CAB41134.1| putative
protein [Arabidopsis thaliana]
Length = 1613
Score = 131 bits (329), Expect = 7e-30
Identities = 66/126 (52%), Positives = 89/126 (70%), Gaps = 2/126 (1%)
Frame = +1
Query: 1 AYVYPTSSNRLCFPAVSSQLMGHASTVSSHFPRPYVVGFPDG-SNSSSAETSRKWPRQGL 177
A++ +SS R CFP V+SQ++G V S++PRPY+VG P+G SN + KW R GL
Sbjct: 1489 AHMDSSSSGRACFPGVNSQILGPGVPVPSNYPRPYIVGLPNGGSNGGVLDNGAKWFRSGL 1548
Query: 178 DLNAGPGGSDLEGRDEILPLPSRQLPVASSHALAEEHARI-QLAGSVCKRKESDGGWDGY 354
DLN+GPGG + EGRDE L +RQL ++S L E+ AR+ Q++G V KRKE +GGWDGY
Sbjct: 1549 DLNSGPGGHETEGRDEST-LVARQLSSSASLPLKEDQARMYQMSGGVLKRKEPEGGWDGY 1607
Query: 355 KRSSWQ 372
++SSWQ
Sbjct: 1608 RQSSWQ 1613
>emb|CAC69851.1| hypothetical protein [Nicotiana tabacum]
Length = 305
Score = 130 bits (327), Expect = 1e-29
Identities = 66/127 (51%), Positives = 87/127 (67%), Gaps = 4/127 (3%)
Frame = +1
Query: 1 AYVYPTSSNRLCFPAVSSQLMGHASTVSSHFPRPYVVGFPDGSNSSSAETSRKWPRQGLD 180
++V +S RL P V+SQL+G VSS +PRPY+VG PD S++ + + +RKW RQGLD
Sbjct: 178 SFVDSSSGGRLYTPPVNSQLLGPVGAVSSQYPRPYMVGLPDSSSNGTMDHNRKWGRQGLD 237
Query: 181 LNAGPGGSDLEGRDEILPLPSRQLPVASSHALAEEHARI-QLAGSVCKRKESDGGWDGYK 357
LNAGPG D+EGR+E + L +RQL VA S ALA+EH R+ + G V KRKE +GGWD
Sbjct: 238 LNAGPGVVDMEGREESVSLSARQLSVAGSQALADEHGRMYAVPGGVLKRKEPEGGWDSEN 297
Query: 358 ---RSSW 369
+ SW
Sbjct: 298 FRFKQSW 304
>ref|NP_190389.1| putative protein; protein id: At3g48060.1 [Arabidopsis thaliana]
gi|7487128|pir||T06677 hypothetical protein T17F15.70 -
Arabidopsis thaliana gi|4678322|emb|CAB41133.1| putative
protein [Arabidopsis thaliana]
Length = 1611
Score = 119 bits (299), Expect = 2e-26
Identities = 63/123 (51%), Positives = 85/123 (68%), Gaps = 2/123 (1%)
Frame = +1
Query: 1 AYVYPTSSNRLCFPAVSSQLMGHASTVSSHFPRPYVVGFPDG-SNSSSAETSRKWPRQGL 177
A++ +SS R FP V+SQ++G V S++PRPY+VG P+G SN + S KW R GL
Sbjct: 1489 AHMDSSSSGRAYFPGVNSQILGPGVPVPSNYPRPYIVGLPNGGSNGGVLDNSAKWFRSGL 1548
Query: 178 DLNAGPGGSDLEGRDEILPLPSRQLPVASSHALAEEHARI-QLAGSVCKRKESDGGWDGY 354
DLN+GPGG + EGRDE L SRQL ++S E+ AR+ Q++G V KRKE +GGWDGY
Sbjct: 1549 DLNSGPGGHETEGRDEST-LVSRQLSSSASVPSKEDQARMYQMSGGVLKRKEPEGGWDGY 1607
Query: 355 KRS 363
++S
Sbjct: 1608 RQS 1610
>gb|EAA04786.1| ebiP3712 [Anopheles gambiae str. PEST]
Length = 674
Score = 35.8 bits (81), Expect = 0.40
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 352 SHPTRHQTPSSYKHYQPAGSLHAPQLGHVNWQQEVALMEEA 230
SHP+ PS Y YQP+G + PQ G + A+++ A
Sbjct: 41 SHPSHAHYPSHYPSYQPSGGIAGPQHGQYHHPPHAAVLQNA 81
>ref|ZP_00090204.1| hypothetical protein [Azotobacter vinelandii]
Length = 143
Score = 33.5 bits (75), Expect = 2.0
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 14/75 (18%)
Frame = -3
Query: 344 HPPSDSFLLQTLPASWILACSSARACELA----------TGSCLDGRGKISSLPS----K 207
HPP ++ PA+ AC +A + A TG+C D GK++++P K
Sbjct: 28 HPPGGHGHMEP-PAAAFTACEGKKAGDTASFSGPGGRSMTGTCRDLNGKLAAMPEHGGRK 86
Query: 206 SEPPGPALRSKPCLG 162
PP A +K C G
Sbjct: 87 GPPPSAAGSAKACEG 101
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,187,480
Number of Sequences: 1393205
Number of extensions: 11926307
Number of successful extensions: 31556
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 30248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31536
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
