Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001347A_C01 KMC001347A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB63844.1| glutamine synthetase I [Medicago truncatula] 130 2e-29
ref|NP_190886.2| nodulin / glutamate-ammonia ligase - like prote... 89 5e-17
pir||T46164 nodulin / glutamate-ammonia ligase-like protein - Ar... 89 5e-17
ref|ZP_00085803.1| hypothetical protein [Pseudomonas fluorescens... 39 0.046
gb|ZP_00010570.1| hypothetical protein [Rhodopseudomonas palustris] 37 0.23
>emb|CAB63844.1| glutamine synthetase I [Medicago truncatula]
Length = 454
Score = 130 bits (326), Expect = 2e-29
Identities = 64/75 (85%), Positives = 68/75 (90%)
Frame = -3
Query: 569 RHHPLPEPVDADPNPENLQRLPKSLSESLEALNKDDFLKEFIDDKLLTAFKAIRKAEIDH 390
RH LPEPVD +P+PE LQRLPKSLSESLEAL+K DFL+EFI DKLLTA KAIRKAEIDH
Sbjct: 380 RHLSLPEPVDTNPDPEKLQRLPKSLSESLEALHKADFLEEFIGDKLLTAIKAIRKAEIDH 439
Query: 389 YSKNKDAYKQLIHRY 345
YSKNKDAYKQLIHRY
Sbjct: 440 YSKNKDAYKQLIHRY 454
>ref|NP_190886.2| nodulin / glutamate-ammonia ligase - like protein; protein id:
At3g53180.1, supported by cDNA: gi_17065449, supported
by cDNA: gi_20148556 [Arabidopsis thaliana]
gi|17065450|gb|AAL32879.1| nodulin / glutamate-ammonia
ligase-like protein [Arabidopsis thaliana]
gi|20148557|gb|AAM10169.1| nodulin / glutamate-ammonia
ligase-like protein [Arabidopsis thaliana]
Length = 394
Score = 88.6 bits (218), Expect = 5e-17
Identities = 43/77 (55%), Positives = 56/77 (71%), Gaps = 2/77 (2%)
Frame = -3
Query: 569 RHHPLPEPVDADPNP--ENLQRLPKSLSESLEALNKDDFLKEFIDDKLLTAFKAIRKAEI 396
RH LP P+D +P L RLP++LSE++EAL+KD L + + KLL A K +RKAE+
Sbjct: 318 RHLQLPTPIDINPADVAATLNRLPETLSEAVEALDKDKVLHDLLGQKLLVAIKGVRKAEV 377
Query: 395 DHYSKNKDAYKQLIHRY 345
++YSKN DAYKQLIHRY
Sbjct: 378 EYYSKNPDAYKQLIHRY 394
>pir||T46164 nodulin / glutamate-ammonia ligase-like protein - Arabidopsis
thaliana gi|6630738|emb|CAB64221.1| nodulin /
glutamate-ammonia ligase-like protein [Arabidopsis
thaliana]
Length = 845
Score = 88.6 bits (218), Expect = 5e-17
Identities = 43/77 (55%), Positives = 56/77 (71%), Gaps = 2/77 (2%)
Frame = -3
Query: 569 RHHPLPEPVDADPNP--ENLQRLPKSLSESLEALNKDDFLKEFIDDKLLTAFKAIRKAEI 396
RH LP P+D +P L RLP++LSE++EAL+KD L + + KLL A K +RKAE+
Sbjct: 769 RHLQLPTPIDINPADVAATLNRLPETLSEAVEALDKDKVLHDLLGQKLLVAIKGVRKAEV 828
Query: 395 DHYSKNKDAYKQLIHRY 345
++YSKN DAYKQLIHRY
Sbjct: 829 EYYSKNPDAYKQLIHRY 845
>ref|ZP_00085803.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 458
Score = 38.9 bits (89), Expect = 0.046
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = -3
Query: 566 HHPL------PEPVDADPNPENLQRLPKSLSESLEALNKDDFLKEFIDDKLLTAFKAIRK 405
HH L P P + + +N Q LP +L ++L L+ + + ++ID K + F A ++
Sbjct: 377 HHGLTNKIEPPAPTEGNSYEQNEQSLPNNLRDALRELDDSEVMAKYIDPKYIDIFVACKE 436
Query: 404 AEIDHY 387
+E++ +
Sbjct: 437 SELEEF 442
>gb|ZP_00010570.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 593
Score = 36.6 bits (83), Expect = 0.23
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -3
Query: 554 PEPVDADPNPENLQRLPKSLSESLEALNKDDFLKEFIDDKLLTAFKAIRKAEIDHYSKNK 375
P P P LPKSL E++ AL D F + + D+ + + I+ AEI+ +
Sbjct: 522 PGPSADTPYETKADLLPKSLREAIFALRDDPFFRTALGDEFVDYYTFIKNAEIERFQAEV 581
Query: 374 DAYKQ 360
++Q
Sbjct: 582 TEWEQ 586
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,723,909
Number of Sequences: 1393205
Number of extensions: 7919840
Number of successful extensions: 20131
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 19470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20083
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
