Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001345A_C01 KMC001345A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186830.1| hypothetical protein; protein id: At3g01810.1 [... 167 1e-40
dbj|BAC53933.1| hypothetical protein [Nicotiana tabacum] 152 4e-36
ref|NP_191337.1| putative protein; protein id: At3g57780.1 [Arab... 145 5e-34
ref|NP_181761.1| unknown protein; protein id: At2g42320.1 [Arabi... 131 1e-29
gb|AAM61597.1| unknown [Arabidopsis thaliana] 131 1e-29
>ref|NP_186830.1| hypothetical protein; protein id: At3g01810.1 [Arabidopsis thaliana]
gi|6091723|gb|AAF03435.1|AC010797_11 hypothetical protein
[Arabidopsis thaliana] gi|26449853|dbj|BAC42049.1|
unknown protein [Arabidopsis thaliana]
Length = 921
Score = 167 bits (423), Expect = 1e-40
Identities = 84/169 (49%), Positives = 115/169 (67%), Gaps = 2/169 (1%)
Frame = -2
Query: 692 SDLLMLPKDMLLSESIRKEVCPMFNASQIKKILDNFVPDEFCPDPIPTDVFEALDSKDDL 513
SDL+MLPKDMLL+ S+RKEVCPMF A IK++L+NFVPDEFCPDP+P V ++L+S+++
Sbjct: 762 SDLMMLPKDMLLNSSVRKEVCPMFGAPLIKRVLNNFVPDEFCPDPVPDAVLKSLESEEEA 821
Query: 512 EDGKDSVNNFPCIAAPIVYSPPPATTIASITGDIGSES--QLRRSQSSVVRKSYTSDDEL 339
E K + ++PC A VY PP T+I++I G+ G QL R +SS+ RK+YTSDDEL
Sbjct: 822 E--KSIITSYPCTAPSPVYCPPSRTSISTIIGNFGQPQAPQLSRIRSSITRKAYTSDDEL 879
Query: 338 DELNSPLSSILFSGSPSPVSTKPNWKKKESRTESAVRYELLRNVWMNSE 192
DEL+SPL+ ++ + S K + +RY+LLR WMN E
Sbjct: 880 DELSSPLAVVVLQQAGSK-------KINNGDADETIRYQLLRECWMNGE 921
>dbj|BAC53933.1| hypothetical protein [Nicotiana tabacum]
Length = 717
Score = 152 bits (384), Expect = 4e-36
Identities = 80/174 (45%), Positives = 111/174 (62%), Gaps = 8/174 (4%)
Frame = -2
Query: 692 SDLLMLPKDMLLSESIRKEVCPMFNASQIKKILDNFVPDEFCPDPIPTDVFEALDSKDDL 513
SDLLMLPKDML+ +IR EVCP + +K+IL NF PDEFCPDP+P V EAL+++ +
Sbjct: 544 SDLLMLPKDMLMDRTIRMEVCPSISLPLVKRILCNFSPDEFCPDPVPGTVLEALNAECII 603
Query: 512 E---DGKDSVNNFPCIAAPIVYSPPPATTIASITGDIGSESQLRRSQSSVVRKSYTSDDE 342
G DS +FP AAP+VY PP A +A ++ +S L RS S++ RK YTSD+E
Sbjct: 604 ARRLSGGDSSGSFPYPAAPVVYKPPVAADVAEKVAEVDGKSLLSRSASAIQRKGYTSDEE 663
Query: 341 LDELNSPLSSILFSGSPSPVSTKPNWKKKESRTE-----SAVRYELLRNVWMNS 195
L+E++SPL+ I+ SP S + +K + + E S RY+LLR VW+ +
Sbjct: 664 LEEIDSPLACIIDKMPSSPASAQNGSRKAKQKEETGSIGSNKRYDLLREVWLTT 717
>ref|NP_191337.1| putative protein; protein id: At3g57780.1 [Arabidopsis thaliana]
gi|7485508|pir||T06742 hypothetical protein F15B8.30 -
Arabidopsis thaliana gi|4678269|emb|CAB41177.1| putative
protein [Arabidopsis thaliana]
Length = 670
Score = 145 bits (366), Expect = 5e-34
Identities = 79/167 (47%), Positives = 112/167 (66%), Gaps = 4/167 (2%)
Frame = -2
Query: 692 SDLLMLPKDMLLSESIRKEVCPMFNASQIKKILDNFVPDEFCPDPIPTDVFEALDSKDDL 513
SDLLMLPKDML+ S R+EVCP + + IK+IL NF PDEFCPD +P V E L++ + +
Sbjct: 507 SDLLMLPKDMLMDRSTREEVCPSISLALIKRILCNFTPDEFCPDDVPGAVLEELNN-ESI 565
Query: 512 EDGKDSVNNFPCIAAPIVYSPPPATTIASITGDIGSESQLRRSQSSVVRKSYTSDDELDE 333
+ K S +FP A+P+ Y+PP +T +A ++G S++ R+ S + RK YTSDDEL+E
Sbjct: 566 SEQKLSGVSFPYAASPVSYTPPSSTNVA----EVGDISRMSRNVSMIQRKGYTSDDELEE 621
Query: 332 LNSPLSSILFSGSPSPVSTKPNWKKKESRT----ESAVRYELLRNVW 204
L+SPL+SI+ + S SP+S + K+E+ + RYELLR VW
Sbjct: 622 LDSPLTSIIENVSLSPISAQGRNVKQEAEKIGPGVTISRYELLREVW 668
>ref|NP_181761.1| unknown protein; protein id: At2g42320.1 [Arabidopsis thaliana]
gi|25341909|pir||E84852 hypothetical protein At2g42320
[imported] - Arabidopsis thaliana
gi|4567304|gb|AAD23715.1| unknown protein [Arabidopsis
thaliana]
Length = 669
Score = 131 bits (329), Expect = 1e-29
Identities = 73/164 (44%), Positives = 99/164 (59%)
Frame = -2
Query: 692 SDLLMLPKDMLLSESIRKEVCPMFNASQIKKILDNFVPDEFCPDPIPTDVFEALDSKDDL 513
SDLLMLPKDML+ SIR+E+CP + IK+IL NF PDEFCPD +P V E L++ + +
Sbjct: 519 SDLLMLPKDMLMEISIREEICPSISLPLIKRILCNFTPDEFCPDQVPGAVLEELNAAESI 578
Query: 512 EDGKDSVNNFPCIAAPIVYSPPPATTIASITGDIGSESQLRRSQSSVVRKSYTSDDELDE 333
D K S +FP A+ + Y PP IA + + ++L R+ S + RK YTSD+EL+E
Sbjct: 579 GDRKLSEASFPYAASSVSYMPPSTMDIAEKVAE--ASAKLSRNVSMIQRKGYTSDEELEE 636
Query: 332 LNSPLSSILFSGSPSPVSTKPNWKKKESRTESAVRYELLRNVWM 201
L+SPL+SI+ S S N RY+LLR VW+
Sbjct: 637 LDSPLTSIVDKASDFTGSATSN-----------ARYKLLRQVWV 669
>gb|AAM61597.1| unknown [Arabidopsis thaliana]
Length = 184
Score = 131 bits (329), Expect = 1e-29
Identities = 73/164 (44%), Positives = 99/164 (59%)
Frame = -2
Query: 692 SDLLMLPKDMLLSESIRKEVCPMFNASQIKKILDNFVPDEFCPDPIPTDVFEALDSKDDL 513
SDLLMLPKDML+ SIR+E+CP + IK+IL NF PDEFCPD +P V E L++ + +
Sbjct: 34 SDLLMLPKDMLMEISIREEICPSISLPLIKRILCNFTPDEFCPDQVPGAVLEELNAAESI 93
Query: 512 EDGKDSVNNFPCIAAPIVYSPPPATTIASITGDIGSESQLRRSQSSVVRKSYTSDDELDE 333
D K S +FP A+ + Y PP IA + + ++L R+ S + RK YTSD+EL+E
Sbjct: 94 GDRKLSEASFPYAASSVSYMPPSTMDIAEKVAE--ASAKLSRNVSMIQRKGYTSDEELEE 151
Query: 332 LNSPLSSILFSGSPSPVSTKPNWKKKESRTESAVRYELLRNVWM 201
L+SPL+SI+ S S N RY+LLR VW+
Sbjct: 152 LDSPLTSIVDKASDFTGSATSN-----------ARYKLLRQVWV 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,578,622
Number of Sequences: 1393205
Number of extensions: 12671052
Number of successful extensions: 40939
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 39167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40896
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
