Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001342A_C01 KMC001342A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191536.1| hypothetical protein; protein id: At3g59770.1 [... 142 3e-33
dbj|BAB19411.1| P0458A05.20 [Oryza sativa (japonica cultivar-gro... 98 7e-20
gb|ZP_00002023.1| hypothetical protein [Nitrosomonas europaea] 32 4.7
>ref|NP_191536.1| hypothetical protein; protein id: At3g59770.1 [Arabidopsis thaliana]
gi|11357608|pir||T47801 hypothetical protein F24G16.40 -
Arabidopsis thaliana gi|7019671|emb|CAB75796.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1616
Score = 142 bits (358), Expect = 3e-33
Identities = 66/99 (66%), Positives = 83/99 (83%)
Frame = -1
Query: 596 QVSVLQDPHSMITLGEYRLPEARAGTPLYFDFPXQIPTRRISFQLLGDVAAFTDDPSEPD 417
QVSVLQ+ + M+T+ EYRLPEAR GT LYFDFP QI +R+SF+LLGDVAAFTD+P+E
Sbjct: 1518 QVSVLQEQYKMVTIAEYRLPEARDGTKLYFDFPKQIQAQRVSFKLLGDVAAFTDEPAEAV 1577
Query: 416 DSGTRISPLASGLSLSHRIKVYYYADPYDPGKWASLAAV 300
D +R SP A+GLSL++RIK+YYYADPY+ GKW SL++V
Sbjct: 1578 DLSSRASPFAAGLSLANRIKLYYYADPYEVGKWTSLSSV 1616
>dbj|BAB19411.1| P0458A05.20 [Oryza sativa (japonica cultivar-group)]
gi|15408676|dbj|BAB64085.1| B1157F09.10 [Oryza sativa
(japonica cultivar-group)]
Length = 1424
Score = 98.2 bits (243), Expect = 7e-20
Identities = 52/100 (52%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Frame = -1
Query: 596 QVSVLQDPHSMITLGEYRLPEARAGTPLYFDFPX-QIPTRRISFQLLGDVAAFTDDPSEP 420
QV+++++ ++ + EYRLPE + TPLY+DF Q R + F+LLGDV AF DD +E
Sbjct: 1326 QVTIVKESGKLV-VEEYRLPEVKVNTPLYYDFQDLQQDVRCVLFRLLGDVTAFVDDIAEI 1384
Query: 419 DDSGTRISPLASGLSLSHRIKVYYYADPYDPGKWASLAAV 300
D S R PLA+GLSLS++IK+YYYAD Y+ GK SL+AV
Sbjct: 1385 DGSNLRNLPLATGLSLSNKIKLYYYADTYEMGKIGSLSAV 1424
>gb|ZP_00002023.1| hypothetical protein [Nitrosomonas europaea]
Length = 437
Score = 32.3 bits (72), Expect = 4.7
Identities = 25/84 (29%), Positives = 33/84 (38%), Gaps = 3/84 (3%)
Frame = -1
Query: 575 PHSMITLGEYR---LPEARAGTPLYFDFPXQIPTRRISFQLLGDVAAFTDDPSEPDDSGT 405
PH + G+ L R GTP FDFP Q +G+ D + SG
Sbjct: 107 PHDSVPAGKDENDNLEMRRWGTPKTFDFPVQ------DHASIGEHLKLIDFETAAKLSGA 160
Query: 404 RISPLASGLSLSHRIKVYYYADPY 333
R S L GL+ HR + D +
Sbjct: 161 RFSLLKGGLARLHRALAQFMLDTH 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,696,246
Number of Sequences: 1393205
Number of extensions: 12495729
Number of successful extensions: 29234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29092
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
