KMC001340A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC001340A_C01 KMC001340A_c01
agggttacatattcagtttccttaatcatgaatgtggttaaagaaaggaaccacaatttA
TGAGAGAACTACCATCTTATTTATTTCACAGTAGTACATATAATATAGTGACAACAATAG
GGCTAATTAACAATGATAAAAGCACAAAAGGGTTACATTATAGGAACATGATCACCATAT
AACTTATTAACCCATAATAACAGAACAGACCAAGCACAACAAAATATCTAAACCTACACC
ATTACATGTGAAGAAAAATGCAGTCACCACCTTTGACTCAAGGGAGTTTCACATGATCAG
AGTGGCAACCCTTCTAAAAAGTCATTTTCACTGGTACCATATTGAAACATCTGGTTGTTT
GTGAAGTGTGTCCATCCCTACTCCGTGTAGATCCTCCTTGAAATCAAAAGATGCCAAATC
ACATGCAGAGCCAAATATCATGTGGATATTATTGTTGTTGTTGTTGTGGTTGGTTTCAAA
GGGAGAGTTCATAGCCTTGAACCGGTCAAATTGACCGTCCTCTCGCGCAAAGAAGTTGCC
ATCCATCACC


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001340A_C01 KMC001340A_c01
         (550 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB95830.1| hypothetical protein [Cicer arietinum]                114  6e-25
gb|AAL76271.1|AF467783_1 transcription factor EIL2 [Vigna radiata]    112  3e-24
gb|AAK67355.1|AF387795_1 transcription factor [Cucumis melo]           86  4e-16
gb|AAL76272.1|AF467784_1 transcription factor EIL1 [Vigna radiata]     82  3e-15
dbj|BAB64344.1| EIN3-like protein [Cucumis melo]                       75  7e-13

>emb|CAB95830.1| hypothetical protein [Cicer arietinum]
          Length = 354

 Score =  114 bits (286), Expect = 6e-25
 Identities = 53/70 (75%), Positives = 60/70 (85%), Gaps = 2/70 (2%)
 Frame = -2

Query: 537 NFFAREDGQFDRFKAMNSPFETNHNNNNNNIHMIFGSACDLASFDFKED--LHGVGMDTL 364
           NFF R++ QFDRFK +NSPFETNH  NNNNIH++FGS CDLASFDFKED  L GVG+DT 
Sbjct: 286 NFFTRDESQFDRFKPINSPFETNH--NNNNIHLMFGSPCDLASFDFKEDIQLQGVGIDTF 343

Query: 363 HKQPDVSIWY 334
           HKQPD+SIWY
Sbjct: 344 HKQPDMSIWY 353

>gb|AAL76271.1|AF467783_1 transcription factor EIL2 [Vigna radiata]
          Length = 622

 Score =  112 bits (280), Expect = 3e-24
 Identities = 51/67 (76%), Positives = 57/67 (84%)
 Frame = -2

Query: 531 FAREDGQFDRFKAMNSPFETNHNNNNNNIHMIFGSACDLASFDFKEDLHGVGMDTLHKQP 352
           FAR++ QFDRFKA+NSPFETNHNNNNN  H +FGS CDLASFDFKED+ GVGMD L KQ 
Sbjct: 557 FARDECQFDRFKALNSPFETNHNNNNN-FHSMFGSFCDLASFDFKEDMQGVGMDALQKQT 615

Query: 351 DVSIWYQ 331
           D S+WYQ
Sbjct: 616 DFSVWYQ 622

>gb|AAK67355.1|AF387795_1 transcription factor [Cucumis melo]
          Length = 621

 Score = 85.5 bits (210), Expect = 4e-16
 Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 16/86 (18%)
 Frame = -2

Query: 549 VMDGNFF------------AREDGQFDRFKAMNSPFETN---HNNNNNNIHMIFGSACDL 415
           +M+GNFF             R++GQ DRFK MNSPFE N   HNNNNNN H++F S  DL
Sbjct: 536 MMEGNFFDGSNVSSSHQMFTRDEGQSDRFKPMNSPFENNHHHHNNNNNNFHLMFSSPFDL 595

Query: 414 ASFDFKEDLHGV-GMDTLHKQPDVSI 340
           ++FD+KE++ GV  +DTL KQ DVS+
Sbjct: 596 STFDYKEEVPGVAAIDTLSKQQDVSM 621

>gb|AAL76272.1|AF467784_1 transcription factor EIL1 [Vigna radiata]
          Length = 609

 Score = 82.4 bits (202), Expect = 3e-15
 Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
 Frame = -2

Query: 543 DGNFFAREDGQFDRFKA--MNSPFETNHNNNNNNIHMIFGSACDLASFDFKEDLHGVGMD 370
           +GNFFARE+GQF+RFKA  MN+PF+TN        HM+F   CDL+SFDFK D+ G GMD
Sbjct: 545 EGNFFAREEGQFERFKAMNMNAPFDTN--------HMLFSPQCDLSSFDFK-DIQGGGMD 595

Query: 369 TLHK-QPDVSIWYQ 331
           T H+ Q +VSIW++
Sbjct: 596 TGHRQQQEVSIWFE 609

>dbj|BAB64344.1| EIN3-like protein [Cucumis melo]
          Length = 693

 Score = 74.7 bits (182), Expect = 7e-13
 Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 14/75 (18%)
 Frame = -2

Query: 549 VMDGNFF------------AREDGQFDRFKAMNSPFETN--HNNNNNNIHMIFGSACDLA 412
           +M+GNFF             R++GQFDRFK MNSPFE N  H+NNNNN H++F S  DL+
Sbjct: 537 MMEGNFFDGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHHHNNNNNFHLMFSSPFDLS 596

Query: 411 SFDFKEDLHGVGMDT 367
           +FD+KE++  V   T
Sbjct: 597 TFDYKEEVPSVQPST 611

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,599,474
Number of Sequences: 1393205
Number of extensions: 10558079
Number of successful extensions: 73972
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 26314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58772
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MWL067e10_f AV769775 1 314
2 GNLf001b09 BP074833 59 479
3 MR014g06_f BP077058 60 543
4 GNf038f10 BP070169 60 467
5 MF015b10_f BP029022 60 464
6 MFL018c07_f BP033832 60 534
7 MF094g06_f BP033230 60 452
8 GENf031b03 BP059648 60 420
9 MR074h03_f BP081721 62 555
10 MWL018e09_f AV768887 62 360
11 GNf041d10 BP070388 63 456
12 GENLf076h11 BP066503 120 538




Lotus japonicus
Kazusa DNA Research Institute