Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001337A_C02 KMC001337A_c02
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193880.1| NADH dehydrogenase like protein; protein id: At... 103 4e-37
pir||B85063 hypothetical protein AT4g05020 [imported] - Arabidop... 103 5e-37
ref|NP_567283.1| coded for by A. thaliana cDNA W43435; protein i... 103 5e-37
ref|NP_179673.1| putative NADH-ubiquinone oxireductase; protein ... 100 6e-36
emb|CAB52797.1| putative external rotenone-insensitive NADH dehy... 100 3e-33
>ref|NP_193880.1| NADH dehydrogenase like protein; protein id: At4g21490.1
[Arabidopsis thaliana] gi|7432655|pir||T05157 NADH
dehydrogenase (ubiquinone) chain NDI1 homolog F18E5.110
- Arabidopsis thaliana gi|3080393|emb|CAA18713.1| NADH
dehydrogenase like protein [Arabidopsis thaliana]
gi|7268946|emb|CAB81256.1| NADH dehydrogenase like
protein [Arabidopsis thaliana]
Length = 478
Score = 103 bits (257), Expect(2) = 4e-37
Identities = 44/51 (86%), Positives = 49/51 (95%)
Frame = -1
Query: 420 QLPGDWVSIGHSTQWLWYSIYASKQVSWRTRALVVTDWTRRFLFGRDSSQI 268
QLPGDWVSIGHS+QWLWYS+YASKQVSWRTR LVV+DW RRF+FGRDSS+I
Sbjct: 428 QLPGDWVSIGHSSQWLWYSVYASKQVSWRTRVLVVSDWMRRFIFGRDSSRI 478
Score = 72.8 bits (177), Expect(2) = 4e-37
Identities = 30/35 (85%), Positives = 33/35 (93%)
Frame = -2
Query: 530 PEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQAA 426
PEGP+R RGEGRHRF+PFRY+HLGQFAPLGGEQ A
Sbjct: 392 PEGPIRIRGEGRHRFRPFRYRHLGQFAPLGGEQTA 426
>pir||B85063 hypothetical protein AT4g05020 [imported] - Arabidopsis thaliana
gi|5732076|gb|AAD48975.1|AF162444_7 contains similarity
to Pfam family PF00070 - Pyridine nucleotide-disulphide
oxidoreductase class-I; score=26.1, E=0.0008, N=1
[Arabidopsis thaliana] gi|7267261|emb|CAB81044.1|
contains similarity to Pfam family PF00070 - Pyridine
nucleotide-disulphide oxidoreductase class-I,
score=26.1, E=0.0008, N=1, coded for by A. thaliana cDNA
W43435~strong similarity to~Contains EF-hand
calcium-binding domain AA393-405~contains EST gb:W43435
[Arabidopsis thaliana]
Length = 583
Score = 103 bits (256), Expect(2) = 5e-37
Identities = 44/51 (86%), Positives = 48/51 (93%)
Frame = -1
Query: 420 QLPGDWVSIGHSTQWLWYSIYASKQVSWRTRALVVTDWTRRFLFGRDSSQI 268
QLPGDWVSIGHS+QWLWYS+YASKQVSWRTR LVV+DW RRF+FGRDSS I
Sbjct: 533 QLPGDWVSIGHSSQWLWYSVYASKQVSWRTRVLVVSDWMRRFIFGRDSSSI 583
Score = 72.8 bits (177), Expect(2) = 5e-37
Identities = 30/35 (85%), Positives = 33/35 (93%)
Frame = -2
Query: 530 PEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQAA 426
PEGP+R RGEGRHRF+PFRY+HLGQFAPLGGEQ A
Sbjct: 497 PEGPIRMRGEGRHRFRPFRYRHLGQFAPLGGEQTA 531
>ref|NP_567283.1| coded for by A. thaliana cDNA W43435; protein id: At4g05020.1,
supported by cDNA: gi_14532463 [Arabidopsis thaliana]
gi|14532464|gb|AAK63960.1| AT4g05020/T32N4_4
[Arabidopsis thaliana] gi|25090208|gb|AAN72252.1|
At4g05020/T32N4_4 [Arabidopsis thaliana]
Length = 582
Score = 103 bits (256), Expect(2) = 5e-37
Identities = 44/51 (86%), Positives = 48/51 (93%)
Frame = -1
Query: 420 QLPGDWVSIGHSTQWLWYSIYASKQVSWRTRALVVTDWTRRFLFGRDSSQI 268
QLPGDWVSIGHS+QWLWYS+YASKQVSWRTR LVV+DW RRF+FGRDSS I
Sbjct: 532 QLPGDWVSIGHSSQWLWYSVYASKQVSWRTRVLVVSDWMRRFIFGRDSSSI 582
Score = 72.8 bits (177), Expect(2) = 5e-37
Identities = 30/35 (85%), Positives = 33/35 (93%)
Frame = -2
Query: 530 PEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQAA 426
PEGP+R RGEGRHRF+PFRY+HLGQFAPLGGEQ A
Sbjct: 496 PEGPIRMRGEGRHRFRPFRYRHLGQFAPLGGEQTA 530
>ref|NP_179673.1| putative NADH-ubiquinone oxireductase; protein id: At2g20800.1
[Arabidopsis thaliana] gi|25285262|pir||E84593 probable
NADH-ubiquinone oxireductase [imported] - Arabidopsis
thaliana gi|4454468|gb|AAD20915.1| putative
NADH-ubiquinone oxireductase [Arabidopsis thaliana]
Length = 582
Score = 100 bits (249), Expect(2) = 6e-36
Identities = 42/51 (82%), Positives = 48/51 (93%)
Frame = -1
Query: 420 QLPGDWVSIGHSTQWLWYSIYASKQVSWRTRALVVTDWTRRFLFGRDSSQI 268
+LPGDWVSIGHS+QWLWYS+YASK VSWRTR LV++DWTRRF+FGRDSS I
Sbjct: 532 ELPGDWVSIGHSSQWLWYSVYASKLVSWRTRMLVISDWTRRFVFGRDSSSI 582
Score = 72.0 bits (175), Expect(2) = 6e-36
Identities = 30/35 (85%), Positives = 32/35 (90%)
Frame = -2
Query: 530 PEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQAA 426
PEGPLRFRGEGRHRF+PFRY+H G FAPLGGEQ A
Sbjct: 496 PEGPLRFRGEGRHRFQPFRYRHFGSFAPLGGEQTA 530
>emb|CAB52797.1| putative external rotenone-insensitive NADH dehydrogenase [Solanum
tuberosum]
Length = 577
Score = 100 bits (248), Expect(2) = 3e-33
Identities = 42/51 (82%), Positives = 48/51 (93%)
Frame = -1
Query: 420 QLPGDWVSIGHSTQWLWYSIYASKQVSWRTRALVVTDWTRRFLFGRDSSQI 268
+LPGDWVS+GHSTQWLWYS+YASKQVSWRTR LVV DW RR++FGRDSS+I
Sbjct: 527 ELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVGDWVRRYIFGRDSSRI 577
Score = 63.2 bits (152), Expect(2) = 3e-33
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = -2
Query: 530 PEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQAA 426
PEGP RF+ GRH F PF Y+HLGQFAPLGG+QAA
Sbjct: 491 PEGPRRFKSSGRHEFLPFEYRHLGQFAPLGGDQAA 525
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,078,223
Number of Sequences: 1393205
Number of extensions: 10601348
Number of successful extensions: 27149
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 26427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27131
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
