Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001332A_C01 KMC001332A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P04929|HRPX_PLALO HISTIDINE-RICH GLYCOPROTEIN PRECURSOR gi|72... 36 0.30
gb|AAN03447.1|AF521671_1 SWI/SNF chromatin remodeling complex su... 35 0.52
emb|CAA69592.1| DAN15 [Homo sapiens] 35 0.52
gb|EAA29336.1| predicted protein [Neurospora crassa] 34 1.2
gb|AAF16874.1| RST transporter homolog [Rattus norvegicus] 33 2.6
>sp|P04929|HRPX_PLALO HISTIDINE-RICH GLYCOPROTEIN PRECURSOR gi|72400|pir||KGZQHL
histidine-rich glycoprotein precursor - Plasmodium
lophurae gi|9999|emb|CAA25698.1| histidine-rich protein
[Plasmodium lophurae] gi|224316|prf||1101401A
protein,His rich
Length = 351
Score = 35.8 bits (81), Expect = 0.30
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = +1
Query: 61 HKRHHHHHHCC*FNHRTSHLCIMNRLNQKCLDDHRFFARHHLKRVQAKDTSDIGRRKHGP 240
H+ HHHHHH +H H + H +F HHL H P
Sbjct: 130 HEEHHHHHHAAHHHHHEEH-----HHHHHAAHHHPWFHHHHLGYHHHHAPHHHHHHHHAP 184
Query: 241 HSNY 252
H ++
Sbjct: 185 HHHH 188
>gb|AAN03447.1|AF521671_1 SWI/SNF chromatin remodeling complex subunit OSA2 [Homo sapiens]
Length = 2165
Score = 35.0 bits (79), Expect = 0.52
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 52 SPVHKRHHHHHHCC*FNHRTSHL----CIMNRLNQ 144
+P H++HHHHHH +H HL + +LNQ
Sbjct: 7 APPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQ 41
>emb|CAA69592.1| DAN15 [Homo sapiens]
Length = 191
Score = 35.0 bits (79), Expect = 0.52
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 52 SPVHKRHHHHHHCC*FNHRTSHL----CIMNRLNQ 144
+P H++HHHHHH +H HL + +LNQ
Sbjct: 70 APPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQ 104
>gb|EAA29336.1| predicted protein [Neurospora crassa]
Length = 689
Score = 33.9 bits (76), Expect = 1.2
Identities = 27/94 (28%), Positives = 35/94 (36%), Gaps = 15/94 (15%)
Frame = +3
Query: 177 PSPEESPSQRYIRHWKTEAWTTLQLW--------------SRRHALICGDDRSRNSPRLF 314
P PE + R I +T LW + H+ C DD+S SP
Sbjct: 399 PEPEPERTVRIIDEATKSLISTTALWIVLRSGWSPNYVPSTHTHSSPCSDDKSPTSPTTG 458
Query: 315 ETKNKMKHGW-LVKRSRSLSTSSGQTGGYSSQIS 413
K + +H W S SL +S G T S Q S
Sbjct: 459 NEKTRRRHTWSRPMASDSLCSSKGSTPPISRQPS 492
>gb|AAF16874.1| RST transporter homolog [Rattus norvegicus]
Length = 89
Score = 32.7 bits (73), Expect = 2.6
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Frame = -2
Query: 506 IYGFIPMLTGI----VQEIRDVNLPDTQILMDMDKRNLATVTTSLAG 378
+YG +P+L+G+ + E +++ LPDT + D+ K+++ VT +AG
Sbjct: 37 VYGVVPVLSGLATLLLPETKNLPLPDT--IQDIQKQSVKKVTHDIAG 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,518,084
Number of Sequences: 1393205
Number of extensions: 10744813
Number of successful extensions: 36759
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32917
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
