Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001328A_C01 KMC001328A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SZC9|AHM6_ARATH Potential copper-transporting ATPase PAA1 g... 110 1e-23
ref|NP_567925.1| metal-transporting P-type ATPase; protein id: A... 110 1e-23
emb|CAA20565.1| metal-transporting P-type ATPase (fragment) [Ara... 110 1e-23
dbj|BAA23769.1| metal-transporting P-type ATPase [Arabidopsis th... 109 3e-23
ref|ZP_00120150.1| hypothetical protein [Cytophaga hutchinsonii] 85 9e-16
>sp|Q9SZC9|AHM6_ARATH Potential copper-transporting ATPase PAA1 gi|7487953|pir||T06003
metal-transporting ATPase, P-type (EC 3.6.1.-) -
Arabidopsis thaliana gi|4490319|emb|CAB38810.1|
metal-transporting P-type ATPase [Arabidopsis thaliana]
gi|7270300|emb|CAB80069.1| metal-transporting P-type
ATPase [Arabidopsis thaliana]
Length = 949
Score = 110 bits (276), Expect = 1e-23
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = -3
Query: 712 TMTTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRF 533
TM TVKQNLWWAF YNIVGIPIAAGVL P+ GTMLTPS+AGALMG+SS+GVMTNSLLLR+
Sbjct: 858 TMKTVKQNLWWAFGYNIVGIPIAAGVLLPLTGTMLTPSMAGALMGVSSLGVMTNSLLLRY 917
Query: 532 KFSSKQ 515
+F S +
Sbjct: 918 RFFSNR 923
>ref|NP_567925.1| metal-transporting P-type ATPase; protein id: At4g33525.1
[Arabidopsis thaliana]
Length = 632
Score = 110 bits (276), Expect = 1e-23
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = -3
Query: 712 TMTTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRF 533
TM TVKQNLWWAF YNIVGIPIAAGVL P+ GTMLTPS+AGALMG+SS+GVMTNSLLLR+
Sbjct: 541 TMKTVKQNLWWAFGYNIVGIPIAAGVLLPLTGTMLTPSMAGALMGVSSLGVMTNSLLLRY 600
Query: 532 KFSSKQ 515
+F S +
Sbjct: 601 RFFSNR 606
>emb|CAA20565.1| metal-transporting P-type ATPase (fragment) [Arabidopsis thaliana]
Length = 870
Score = 110 bits (276), Expect = 1e-23
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = -3
Query: 712 TMTTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRF 533
TM TVKQNLWWAF YNIVGIPIAAGVL P+ GTMLTPS+AGALMG+SS+GVMTNSLLLR+
Sbjct: 779 TMKTVKQNLWWAFGYNIVGIPIAAGVLLPLTGTMLTPSMAGALMGVSSLGVMTNSLLLRY 838
Query: 532 KFSSKQ 515
+F S +
Sbjct: 839 RFFSNR 844
>dbj|BAA23769.1| metal-transporting P-type ATPase [Arabidopsis thaliana]
Length = 949
Score = 109 bits (273), Expect = 3e-23
Identities = 52/66 (78%), Positives = 60/66 (90%)
Frame = -3
Query: 712 TMTTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRF 533
TM TVKQNLWWAF YNIVGIPIAAGVL P+ GTMLTPS+AGALMG++S+GVMTNSLLLR+
Sbjct: 858 TMKTVKQNLWWAFGYNIVGIPIAAGVLLPLTGTMLTPSMAGALMGVTSLGVMTNSLLLRY 917
Query: 532 KFSSKQ 515
+F S +
Sbjct: 918 RFFSNR 923
>ref|ZP_00120150.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 804
Score = 85.1 bits (209), Expect = 9e-16
Identities = 37/61 (60%), Positives = 50/61 (81%)
Frame = -3
Query: 712 TMTTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRF 533
T+ ++QNL+WAFIYNI+GIP+AAG+L+P G +L P IAGA M LSS+ V++NSL L+F
Sbjct: 742 TVNAIRQNLFWAFIYNIIGIPLAAGILYPFTGFLLNPMIAGAAMALSSVSVVSNSLRLKF 801
Query: 532 K 530
K
Sbjct: 802 K 802
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,369,200
Number of Sequences: 1393205
Number of extensions: 13436340
Number of successful extensions: 38586
Number of sequences better than 10.0: 289
Number of HSP's better than 10.0 without gapping: 36642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38424
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
