Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001327A_C01 KMC001327A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187599.1| B' regulatory subunit of PP2A (AtB'beta); prote... 105 2e-22
ref|NP_195967.1| putative protein; protein id: At5g03470.1, supp... 94 7e-19
gb|AAK00963.1|AC079736_3 putative B' regulatory subunit of prote... 92 3e-18
ref|NP_191053.1| protein phosphatase 2A regulatory subunit B-lik... 91 6e-18
ref|NP_189231.1| putative B regulatory subunit of protein phosph... 75 4e-13
>ref|NP_187599.1| B' regulatory subunit of PP2A (AtB'beta); protein id: At3g09880.1,
supported by cDNA: gi_18176454, supported by cDNA:
gi_21280991, supported by cDNA: gi_2160691 [Arabidopsis
thaliana] gi|2160692|gb|AAB58901.1| B' regulatory
subunit of PP2A [Arabidopsis thaliana]
gi|6681331|gb|AAF23248.1|AC015985_6 B' regulatory
subunit of PP2A (AtB'beta) [Arabidopsis thaliana]
gi|18176455|gb|AAL60047.1| putative B' regulatory
subunit of PP2A AtB'beta [Arabidopsis thaliana]
gi|21280992|gb|AAM44900.1| putative B' regulatory
subunit of PP2A AtB'beta [Arabidopsis thaliana]
Length = 499
Score = 105 bits (263), Expect = 2e-22
Identities = 47/69 (68%), Positives = 56/69 (81%)
Frame = -3
Query: 513 LEKHIQSHWNQAVNGLTVNVRKMFLEMDAELFEECQRQYAEREAKANEVEEQRQLNWKKL 334
LEK+IQSHWNQAV+GLT N++KMF+EMD ELFEECQRQY E++AK+ EVEEQRQ WK+L
Sbjct: 420 LEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRL 479
Query: 333 ARGGCTEPG 307
A G
Sbjct: 480 AEAAAERDG 488
>ref|NP_195967.1| putative protein; protein id: At5g03470.1, supported by cDNA:
gi_2160689 [Arabidopsis thaliana]
gi|11291677|pir||T48372 AtB'alpha regulatory subunit of
PP2A - Arabidopsis thaliana gi|2160690|gb|AAB58900.1| B'
regulatory subunit of PP2A [Arabidopsis thaliana]
gi|7378631|emb|CAB83307.1| AtB'alpha regulatory subunit
of PP2A [Arabidopsis thaliana]
gi|27754602|gb|AAO22747.1| unknown protein [Arabidopsis
thaliana]
Length = 495
Score = 94.4 bits (233), Expect = 7e-19
Identities = 39/60 (65%), Positives = 54/60 (90%)
Frame = -3
Query: 513 LEKHIQSHWNQAVNGLTVNVRKMFLEMDAELFEECQRQYAEREAKANEVEEQRQLNWKKL 334
LEK+I+SHWNQAV+GL+ N+++MF+EMD ELFEECQ+QY E++AK+ +VEEQRQ W++L
Sbjct: 420 LEKNIESHWNQAVHGLSANIKRMFMEMDPELFEECQQQYEEKQAKSKQVEEQRQNRWRRL 479
>gb|AAK00963.1|AC079736_3 putative B' regulatory subunit of protein phosphatase 2A,
5'-partial [Oryza sativa]
Length = 93
Score = 92.4 bits (228), Expect = 3e-18
Identities = 41/69 (59%), Positives = 54/69 (77%)
Frame = -3
Query: 513 LEKHIQSHWNQAVNGLTVNVRKMFLEMDAELFEECQRQYAEREAKANEVEEQRQLNWKKL 334
LE++I SHWNQAV+GLT NVRKMFL+MD+ELFEECQ+QY E++A+A ++EEQR W++L
Sbjct: 18 LERNITSHWNQAVHGLTANVRKMFLDMDSELFEECQQQYIEKQARAKDMEEQRLSAWRQL 77
Query: 333 ARGGCTEPG 307
G
Sbjct: 78 EAAAAKASG 86
>ref|NP_191053.1| protein phosphatase 2A regulatory subunit B-like protein; protein
id: At3g54930.1 [Arabidopsis thaliana]
gi|7486344|pir||T06727 hypothetical protein F28P10.90 -
Arabidopsis thaliana gi|4678300|emb|CAB41091.1| B'
regulatory subunit of PP2A-like protein [Arabidopsis
thaliana] gi|11139998|emb|CAC16085.1| B regulatory
subunit of PP2A [Arabidopsis thaliana]
Length = 497
Score = 91.3 bits (225), Expect = 6e-18
Identities = 40/60 (66%), Positives = 52/60 (86%)
Frame = -3
Query: 513 LEKHIQSHWNQAVNGLTVNVRKMFLEMDAELFEECQRQYAEREAKANEVEEQRQLNWKKL 334
LE++++ HWNQAV+GL+ NVR+MFLEMD ELFEEC++QY E EAKA E+ EQR+L WK+L
Sbjct: 429 LERNMKGHWNQAVHGLSENVRRMFLEMDTELFEECEKQYLENEAKACELLEQRELTWKRL 488
>ref|NP_189231.1| putative B regulatory subunit of protein phosphatase 2A; protein
id: At3g26020.1, supported by cDNA: gi_14194122,
supported by cDNA: gi_16323339 [Arabidopsis thaliana]
gi|9279607|dbj|BAB01065.1| protein phosphatase 2A
regulatory subunit B' [Arabidopsis thaliana]
gi|14194123|gb|AAK56256.1|AF367267_1 AT3g26020/MPE11_17
[Arabidopsis thaliana] gi|16323340|gb|AAL15383.1|
AT3g26020/MPE11_17 [Arabidopsis thaliana]
Length = 510
Score = 75.1 bits (183), Expect = 4e-13
Identities = 33/64 (51%), Positives = 47/64 (72%)
Frame = -3
Query: 513 LEKHIQSHWNQAVNGLTVNVRKMFLEMDAELFEECQRQYAEREAKANEVEEQRQLNWKKL 334
LE++ Q HWNQAV+ LT+NVRK+F ++D ELF+EC ++ E E+KA E E +R+ WK+L
Sbjct: 442 LERNAQKHWNQAVHSLTLNVRKIFHDLDPELFKECLAKFKEDESKAAETEAKREATWKRL 501
Query: 333 ARGG 322
G
Sbjct: 502 EELG 505
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,443,639
Number of Sequences: 1393205
Number of extensions: 9703978
Number of successful extensions: 34173
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 30691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33572
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
