Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001323A_C01 KMC001323A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703851.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.30
ref|NP_719966.1| response regulator/sensor histidine kinase [She... 32 5.6
ref|XP_225882.1| similar to hypothetical protein DRAPC1 [Homo sa... 32 9.5
ref|NP_037201.1| CD74 antigen (invariant polpypeptide of major h... 32 9.5
ref|NP_702687.1| hypothetical protein [Plasmodium falciparum 3D7... 32 9.5
>ref|NP_703851.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498512|emb|CAD50463.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1062
Score = 36.6 bits (83), Expect = 0.30
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = -3
Query: 331 YSEVKLTIYQTLIFRNIFLFNFMKIHCSMFLFYCFKTCKFPSFSCLLYLV 182
Y E I+QT +F NI+++N + C +F+++ + + PSF LY++
Sbjct: 833 YDEYNKNIFQT-VFYNIYMYNGLNT-CELFIYFILRNMQVPSFPSSLYIL 880
>ref|NP_719966.1| response regulator/sensor histidine kinase [Shewanella oneidensis
MR-1] gi|24350905|gb|AAN57410.1|AE015877_1 response
regulator/sensor histidine kinase [Shewanella oneidensis
MR-1]
Length = 1141
Score = 32.3 bits (72), Expect = 5.6
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = +2
Query: 47 IEGQGFPNICYVTVPWILT*SST-SKNLS*KVNYPS-KLRNNMMHHYHQI--QEAAKRRK 214
+ Q ++CY+ + WI T ST ++++ KVN+P K+ H +QI Q K+ +
Sbjct: 875 LTSQAVKDVCYINMGWIDTIVSTPQRDITLKVNWPECKILLIEDHQLNQILVQRQLKQLR 934
Query: 215 FTCLEAIKKEHGTMNFHKIKQKNVPED*SLIDCK 316
C A EHG ++Q + D L DC+
Sbjct: 935 LDCDIA---EHGVQALDLMQQTHY--DLILCDCR 963
>ref|XP_225882.1| similar to hypothetical protein DRAPC1 [Homo sapiens] [Rattus
norvegicus]
Length = 371
Score = 31.6 bits (70), Expect = 9.5
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 10/62 (16%)
Frame = -2
Query: 509 KPRSSCIRWLSVKILKMKMV*RLWKWNQVKISSVPQ----------GKFLLPNNHQRAMS 360
KPR + +R+ ++ KMK R +W Q + +VP G F PN+ RAMS
Sbjct: 269 KPRRNLVRYQALSQRKMK---RNRRWRQSRTHAVPHTGTPSLYVDTGAFTDPNSSHRAMS 325
Query: 359 VE 354
E
Sbjct: 326 AE 327
>ref|NP_037201.1| CD74 antigen (invariant polpypeptide of major histocompatibility
class II antigen-associated) [Rattus norvegicus]
gi|56498|emb|CAA31450.1| invariant chain gamma (AA 1 -
216) [Rattus norvegicus]
Length = 216
Score = 31.6 bits (70), Expect = 9.5
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = -3
Query: 625 WLASANSSNATGSREPSLSAPKEPLDRDDHS 533
WL S N+ ++P+ + PKEPLD +D S
Sbjct: 171 WLLFEMSKNSLEEKQPTQTPPKEPLDMEDPS 201
>ref|NP_702687.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498153|emb|CAD49125.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3787
Score = 31.6 bits (70), Expect = 9.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -2
Query: 383 NNHQRAMSVEDPLMVRFVQRGKTYNLSNSNLQEHFFV*FYENSLFHVP 240
NNH ++ + D ++VQ+ Y+ +N N ++ F+ F N+ + P
Sbjct: 3387 NNHLESLILPDRHNKKYVQQKINYHTNNMNYADYLFINFINNNTLYKP 3434
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,144,785
Number of Sequences: 1393205
Number of extensions: 12463102
Number of successful extensions: 35314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35307
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
