Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001321A_C01 KMC001321A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177979.1| trehalose-6-phosphate synthase, putative; prote... 97 1e-19
emb|CAA69879.1| trehalose-6-phosphate synthase [Arabidopsis thal... 97 1e-19
gb|AAK44102.2|AF370287_1 putative trehalose-6-phosphate synthase... 97 1e-19
pir||F86305 trehalose-6-phosphate synthase homolog [imported] - ... 56 5e-07
ref|NP_173143.1| trehalose-6-phosphate synthase, putative; prote... 56 5e-07
>ref|NP_177979.1| trehalose-6-phosphate synthase, putative; protein id: At1g78580.1
[Arabidopsis thaliana] gi|25347127|pir||D96814
trehalose-6-phosphate synthase [imported] - Arabidopsis
thaliana gi|4836875|gb|AAD30578.1|AC007260_9
trehalose-6-phosphate synthase [Arabidopsis thaliana]
Length = 942
Score = 97.4 bits (241), Expect = 1e-19
Identities = 48/87 (55%), Positives = 61/87 (69%)
Frame = -2
Query: 636 SASKNGAKSFQNKGQRPLSNSEKKASNHHICPPQRPATTEKISWNVLDLKKENYFSCAVG 457
S+S + + + QR L + K SNH + +RP+ EKISWNVLDLK ENYFSCAVG
Sbjct: 854 SSSSSNSNNNNKSSQRSLQSERKSGSNHSLGNSRRPSP-EKISWNVLDLKGENYFSCAVG 912
Query: 456 RTQTNARYTLGSSDDVIAFFKELADAS 376
RT+TNARY LGS DDV+ F ++LAD +
Sbjct: 913 RTRTNARYLLGSPDDVVCFLEKLADTT 939
>emb|CAA69879.1| trehalose-6-phosphate synthase [Arabidopsis thaliana]
Length = 942
Score = 97.4 bits (241), Expect = 1e-19
Identities = 48/87 (55%), Positives = 61/87 (69%)
Frame = -2
Query: 636 SASKNGAKSFQNKGQRPLSNSEKKASNHHICPPQRPATTEKISWNVLDLKKENYFSCAVG 457
S+S + + + QR L + K SNH + +RP+ EKISWNVLDLK ENYFSCAVG
Sbjct: 854 SSSSSNSNNNNKSSQRSLQSERKSGSNHSLGNSRRPSP-EKISWNVLDLKGENYFSCAVG 912
Query: 456 RTQTNARYTLGSSDDVIAFFKELADAS 376
RT+TNARY LGS DDV+ F ++LAD +
Sbjct: 913 RTRTNARYLLGSPDDVVCFLEKLADTT 939
>gb|AAK44102.2|AF370287_1 putative trehalose-6-phosphate synthase [Arabidopsis thaliana]
Length = 554
Score = 97.4 bits (241), Expect = 1e-19
Identities = 48/87 (55%), Positives = 61/87 (69%)
Frame = -2
Query: 636 SASKNGAKSFQNKGQRPLSNSEKKASNHHICPPQRPATTEKISWNVLDLKKENYFSCAVG 457
S+S + + + QR L + K SNH + +RP+ EKISWNVLDLK ENYFSCAVG
Sbjct: 466 SSSSSNSNNNNKSSQRSLQSERKSGSNHSLGNSRRPSP-EKISWNVLDLKGENYFSCAVG 524
Query: 456 RTQTNARYTLGSSDDVIAFFKELADAS 376
RT+TNARY LGS DDV+ F ++LAD +
Sbjct: 525 RTRTNARYLLGSPDDVVCFLEKLADTT 551
>pir||F86305 trehalose-6-phosphate synthase homolog [imported] - Arabidopsis
thaliana gi|5734770|gb|AAD50035.1|AC007651_30 Very
similar to trehalose-6-phosphate synthase [Arabidopsis
thaliana]
Length = 699
Score = 55.8 bits (133), Expect = 5e-07
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = -2
Query: 582 SNSEKKASNHHICPPQRPATTEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSSDDVIA 403
+ S+ +SNH + +K+S NVLDLK+ENYFS A+G+ +T ARY + SS +V+
Sbjct: 628 TRSKSSSSNHSL--------EKKVSLNVLDLKQENYFSTAIGQARTKARYVVDSSHNVVN 679
Query: 402 FFKELADAS 376
+LA A+
Sbjct: 680 LLHKLAVAN 688
>ref|NP_173143.1| trehalose-6-phosphate synthase, putative; protein id: At1g17000.1
[Arabidopsis thaliana]
Length = 730
Score = 55.8 bits (133), Expect = 5e-07
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = -2
Query: 582 SNSEKKASNHHICPPQRPATTEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSSDDVIA 403
+ S+ +SNH + +K+S NVLDLK+ENYFS A+G+ +T ARY + SS +V+
Sbjct: 659 TRSKSSSSNHSL--------EKKVSLNVLDLKQENYFSTAIGQARTKARYVVDSSHNVVN 710
Query: 402 FFKELADAS 376
+LA A+
Sbjct: 711 LLHKLAVAN 719
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,559,870
Number of Sequences: 1393205
Number of extensions: 8942327
Number of successful extensions: 19378
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19371
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
