Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001320A_C01 KMC001320A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175627.1| HD-Zip transcription factor; protein id: At1g52... 199 1e-50
emb|CAC84276.1| HD-Zip protein [Zinnia elegans] 179 2e-44
ref|NP_195014.1| HD-Zip transcription factor, Athb-8; protein id... 176 9e-44
dbj|BAC22512.1| homeobox leucine-zipper protein [Zinnia elegans] 171 5e-42
dbj|BAB92205.1| putative HD-zip transcription factor [Oryza sati... 162 2e-39
>ref|NP_175627.1| HD-Zip transcription factor; protein id: At1g52150.1, supported by
cDNA: gi_16974580 [Arabidopsis thaliana]
gi|25405530|pir||E96561 hypothetical protein F5F19.21
[imported] - Arabidopsis thaliana
gi|4220462|gb|AAD12689.1| Strong similarity to gb|Z50851
HD-zip (athb-8) gene from Arabidopsis thaliana containing
Homeobox PF|00046 and bZIP PF|00170 domains
gi|16974581|gb|AAL31186.1| At1g52150/F5F19_21
[Arabidopsis thaliana] gi|19578319|emb|CAD28400.1|
homeodomain-leucine zipper protein [Arabidopsis thaliana]
Length = 836
Score = 199 bits (507), Expect = 1e-50
Identities = 92/102 (90%), Positives = 99/102 (96%)
Frame = -1
Query: 485 CSLKXLPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKILCSEFPQIMQQGFMCMQ 306
CS+K LPVFTFANQAGLDMLETTLVALQDI+LEKIFDDNG+K LCSEFPQIMQQGF C+Q
Sbjct: 735 CSMKALPVFTFANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQ 794
Query: 305 GGICLSSMGRPISYERAVAWKVLNEEESAHCICFMFINWSFV 180
GGICLSSMGRP+SYERAVAWKVLNEEE+AHCICF+FINWSFV
Sbjct: 795 GGICLSSMGRPVSYERAVAWKVLNEEENAHCICFVFINWSFV 836
>emb|CAC84276.1| HD-Zip protein [Zinnia elegans]
Length = 838
Score = 179 bits (453), Expect = 2e-44
Identities = 81/102 (79%), Positives = 93/102 (90%)
Frame = -1
Query: 485 CSLKXLPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKILCSEFPQIMQQGFMCMQ 306
CSLK +PVF FANQ GLDMLE LVALQDI+L+KI D+NG+K+L SEFPQIMQQGF C+Q
Sbjct: 737 CSLKGMPVFPFANQGGLDMLEPPLVALQDISLKKILDENGRKVLWSEFPQIMQQGFACLQ 796
Query: 305 GGICLSSMGRPISYERAVAWKVLNEEESAHCICFMFINWSFV 180
GGIC+SSMGRP+SYERAVAWKV+NE+E+ HCICFMFINWSFV
Sbjct: 797 GGICVSSMGRPVSYERAVAWKVVNEDETPHCICFMFINWSFV 838
>ref|NP_195014.1| HD-Zip transcription factor, Athb-8; protein id: At4g32880.1,
supported by cDNA: gi_20466329 [Arabidopsis thaliana]
gi|7488380|pir||T10695 transcription factor HD-zip -
Arabidopsis thaliana gi|1149569|emb|CAA90703.1| HD-zip
[Arabidopsis thaliana] gi|7270235|emb|CAB80005.1| HD-zip
transcription factor (athb-8) [Arabidopsis thaliana]
gi|20152536|emb|CAD29660.1| homeodomain-leucine zipper
protein 8 [Arabidopsis thaliana]
gi|20466330|gb|AAM20482.1| HD-zip transcription factor
(athb-8) [Arabidopsis thaliana]
Length = 833
Score = 176 bits (447), Expect = 9e-44
Identities = 84/104 (80%), Positives = 94/104 (89%), Gaps = 2/104 (1%)
Frame = -1
Query: 485 CSLKXL-PVFTFANQAGLDMLETTLVALQDITLEKIFDDN-GKKILCSEFPQIMQQGFMC 312
CSLK L PVFTFANQAGLDMLETTLVALQDITL+KIFD+N GKK L SEFPQIMQQGFMC
Sbjct: 730 CSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQQGFMC 789
Query: 311 MQGGICLSSMGRPISYERAVAWKVLNEEESAHCICFMFINWSFV 180
M GGIC+SSMGR ++YE+AV WKVLN++E HCICFMF+NWSF+
Sbjct: 790 MDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMFLNWSFI 833
>dbj|BAC22512.1| homeobox leucine-zipper protein [Zinnia elegans]
Length = 836
Score = 171 bits (432), Expect = 5e-42
Identities = 77/102 (75%), Positives = 89/102 (86%)
Frame = -1
Query: 485 CSLKXLPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKILCSEFPQIMQQGFMCMQ 306
CSLK LP FTFANQAGLDMLETTLV+LQDITL+KIFD G+ +CSE PQI+QQGF C
Sbjct: 735 CSLKALPDFTFANQAGLDMLETTLVSLQDITLDKIFDRGGRTSICSELPQILQQGFACFP 794
Query: 305 GGICLSSMGRPISYERAVAWKVLNEEESAHCICFMFINWSFV 180
G+CL+SMGRP+SYERAVAWKVLN+EE+ HCI F+F+NWSFV
Sbjct: 795 SGVCLTSMGRPVSYERAVAWKVLNDEENPHCIAFVFVNWSFV 836
>dbj|BAB92205.1| putative HD-zip transcription factor [Oryza sativa (japonica
cultivar-group)]
Length = 898
Score = 162 bits (410), Expect = 2e-39
Identities = 73/103 (70%), Positives = 90/103 (86%), Gaps = 1/103 (0%)
Frame = -1
Query: 485 CSLKXLPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKILCSEFPQIMQQGFMCMQ 306
CSLK +PVFTFANQ+GLDMLETTLVALQD+TLEK+FDD G+K LC+E P IM+QG CM+
Sbjct: 796 CSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACME 855
Query: 305 GGICLSSMGRPISYERAVAWKVLN-EEESAHCICFMFINWSFV 180
GG+C+SS+GR SYE+AVAWKV++ + AHCICFMFINW+F+
Sbjct: 856 GGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 898
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,623,361
Number of Sequences: 1393205
Number of extensions: 8847647
Number of successful extensions: 20487
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 20051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20474
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
