Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001319A_C01 KMC001319A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180146.1| unknown protein; protein id: At2g25750.1 [Arabi... 195 3e-49
gb|AAO37965.1| putative serine/threonine protein kinase [Oryza s... 192 3e-48
dbj|BAB89852.1| putative casein kinase [Oryza sativa (japonica c... 191 4e-48
gb|AAM91528.1| putative casein kinase [Arabidopsis thaliana] 191 7e-48
gb|AAF00624.1|AC009540_1 unknown protein, 5' partial [Arabidopsi... 191 7e-48
>ref|NP_180146.1| unknown protein; protein id: At2g25750.1 [Arabidopsis thaliana]
gi|25371361|pir||C84652 hypothetical protein At2g25750
[imported] - Arabidopsis thaliana
gi|3643607|gb|AAC42254.1| unknown protein [Arabidopsis
thaliana]
Length = 282
Score = 195 bits (496), Expect = 3e-49
Identities = 92/110 (83%), Positives = 101/110 (91%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITSTAATADQ 377
EGFYVT+MAT+ +WG+VMSRGA FSDQV+ELDFLYPSEGIH+RW+ GYRITS AAT DQ
Sbjct: 173 EGFYVTSMATAGSKWGIVMSRGASFSDQVIELDFLYPSEGIHRRWENGYRITSVAATWDQ 232
Query: 376 AAFVLSVPRRKPTDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTVS 227
AAFVLSVPRRK TDETQETLRT+AFPS HVKEKW KNLYIAS+CYGRTVS
Sbjct: 233 AAFVLSVPRRKLTDETQETLRTSAFPSNHVKEKWGKNLYIASICYGRTVS 282
Score = 57.0 bits (136), Expect = 2e-07
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVEL--DFLYPSEGIHKRWDCGYRITSTAATA 383
+G +++++A+ + W ++M G+GF+DQV +L FL+ E I ++W+ Y IT+ A
Sbjct: 79 DGLFISSVASCTDLWALIMDAGSGFTDQVYQLSPSFLH-KEWIMEQWEKNYYITAVAGAN 137
Query: 382 DQAAFVLSVPRRKPTDETQETLRTT-AFPSTHVKEKWAKNLYIASV 248
+FV+ K T Q++ + + +FP + +KW + Y+ S+
Sbjct: 138 SGNSFVV---MSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTSM 180
>gb|AAO37965.1| putative serine/threonine protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 707
Score = 192 bits (487), Expect = 3e-48
Identities = 88/109 (80%), Positives = 101/109 (91%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITSTAATADQ 377
EGF+VT+MAT+ RWGVVMSR AG+S QVVELDFLYPSEGIH+RW+ GYRITSTAAT DQ
Sbjct: 598 EGFHVTSMATAGNRWGVVMSRNAGYSHQVVELDFLYPSEGIHRRWETGYRITSTAATPDQ 657
Query: 376 AAFVLSVPRRKPTDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTV 230
AAF+LS+P+RKP DETQETLRT++FPS HVKEKW+KNLYIAS+CYGRTV
Sbjct: 658 AAFILSIPKRKPMDETQETLRTSSFPSNHVKEKWSKNLYIASICYGRTV 706
Score = 54.7 bits (130), Expect = 8e-07
Identities = 28/105 (26%), Positives = 59/105 (55%), Gaps = 2/105 (1%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLY-PSEGIHKRWDCGYRITSTAATAD 380
+G Y++ +++S+ W ++M G GF QV EL ++ + I ++W+ Y IT+ A +
Sbjct: 504 DGLYISCVSSSANFWALIMDAGTGFCSQVYELSQVFLHKDWIMEQWEKNYYITAIAGATN 563
Query: 379 QAAFVLSVPRRKPTDETQETLRTT-AFPSTHVKEKWAKNLYIASV 248
++ V+ K T TQ++ + + +FP + +KW + ++ S+
Sbjct: 564 GSSLVV---MSKGTPYTQQSYKVSESFPYKWINKKWKEGFHVTSM 605
>dbj|BAB89852.1| putative casein kinase [Oryza sativa (japonica cultivar-group)]
Length = 698
Score = 191 bits (486), Expect = 4e-48
Identities = 89/110 (80%), Positives = 101/110 (90%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITSTAATADQ 377
EGF+VT+M T+ RWGVVMSR +GFS+QVVELDFLYPSEGIH+RW+ GYRITSTAAT DQ
Sbjct: 589 EGFHVTSMTTAGSRWGVVMSRNSGFSEQVVELDFLYPSEGIHRRWENGYRITSTAATGDQ 648
Query: 376 AAFVLSVPRRKPTDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTVS 227
AAF+LS+P+RK DETQETLRT+AFPS HVKEKWAKNLYIAS+CYGRTVS
Sbjct: 649 AAFILSIPKRKLMDETQETLRTSAFPSNHVKEKWAKNLYIASICYGRTVS 698
Score = 54.3 bits (129), Expect = 1e-06
Identities = 27/105 (25%), Positives = 61/105 (57%), Gaps = 2/105 (1%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLY-PSEGIHKRWDCGYRITSTAATAD 380
+G +++++A+S+ W ++M G GF+ QV EL ++ + I ++W+ Y I++ A +
Sbjct: 495 DGLFISSVASSANLWALIMDAGTGFTSQVYELSPIFLHKDWIMEQWENNYYISAIAGATN 554
Query: 379 QAAFVLSVPRRKPTDETQETLRTT-AFPSTHVKEKWAKNLYIASV 248
++ V+ K T TQ++ + + +FP + +KW + ++ S+
Sbjct: 555 GSSLVV---MSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSM 596
>gb|AAM91528.1| putative casein kinase [Arabidopsis thaliana]
Length = 303
Score = 191 bits (484), Expect = 7e-48
Identities = 88/109 (80%), Positives = 101/109 (91%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITSTAATADQ 377
EGF+VT+M T+ RWGVVMSR +G+S+QVVELDFLYPSEGIH+RW+ GYRITS AATADQ
Sbjct: 194 EGFHVTSMTTAGSRWGVVMSRNSGYSEQVVELDFLYPSEGIHRRWESGYRITSMAATADQ 253
Query: 376 AAFVLSVPRRKPTDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTV 230
AA +LS+P+RK TDETQETLRT+AFPSTHVKEKWAKNLYIAS+CYGRTV
Sbjct: 254 AALILSIPKRKITDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTV 302
Score = 57.0 bits (136), Expect = 2e-07
Identities = 29/105 (27%), Positives = 60/105 (56%), Gaps = 2/105 (1%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLY-PSEGIHKRWDCGYRITSTAATAD 380
+G +++ +A+S+ W ++M G GFS QV EL ++ + I ++W+ Y I+S A +
Sbjct: 100 DGLFISCVASSANLWAIIMDAGTGFSSQVYELSSVFLHKDWIMEQWEKNYYISSIAGANN 159
Query: 379 QAAFVLSVPRRKPTDETQETLRTT-AFPSTHVKEKWAKNLYIASV 248
++ V+ K T TQ++ + + +FP + +KW + ++ S+
Sbjct: 160 GSSLVVMA---KGTPYTQQSYKVSDSFPFKWINKKWKEGFHVTSM 201
>gb|AAF00624.1|AC009540_1 unknown protein, 5' partial [Arabidopsis thaliana]
Length = 494
Score = 191 bits (484), Expect = 7e-48
Identities = 88/109 (80%), Positives = 101/109 (91%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITSTAATADQ 377
EGF+VT+M T+ RWGVVMSR +G+S+QVVELDFLYPSEGIH+RW+ GYRITS AATADQ
Sbjct: 385 EGFHVTSMTTAGSRWGVVMSRNSGYSEQVVELDFLYPSEGIHRRWESGYRITSMAATADQ 444
Query: 376 AAFVLSVPRRKPTDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTV 230
AA +LS+P+RK TDETQETLRT+AFPSTHVKEKWAKNLYIAS+CYGRTV
Sbjct: 445 AALILSIPKRKITDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTV 493
Score = 57.0 bits (136), Expect = 2e-07
Identities = 29/105 (27%), Positives = 60/105 (56%), Gaps = 2/105 (1%)
Frame = -2
Query: 556 EGFYVTAMATSSIRWGVVMSRGAGFSDQVVELDFLY-PSEGIHKRWDCGYRITSTAATAD 380
+G +++ +A+S+ W ++M G GFS QV EL ++ + I ++W+ Y I+S A +
Sbjct: 291 DGLFISCVASSANLWAIIMDAGTGFSSQVYELSSVFLHKDWIMEQWEKNYYISSIAGANN 350
Query: 379 QAAFVLSVPRRKPTDETQETLRTT-AFPSTHVKEKWAKNLYIASV 248
++ V+ K T TQ++ + + +FP + +KW + ++ S+
Sbjct: 351 GSSLVVMA---KGTPYTQQSYKVSDSFPFKWINKKWKEGFHVTSM 392
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,277,194
Number of Sequences: 1393205
Number of extensions: 10406612
Number of successful extensions: 40201
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 34175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40172
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
