Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001317A_C01 KMC001317A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680598.1| similar to S-locus protein 4-like; protein id: ... 65 6e-10
gb|AAD03447.1| contains similarity to human PCF11p homolog (GB:A... 65 6e-10
ref|NP_565848.1| hypothetical protein; protein id: At2g36480.1 [... 62 7e-09
pir||C84781 hypothetical protein At2g36480 [imported] - Arabidop... 62 7e-09
emb|CAC81237.1| putative PCF11 protein [Brassica napus] 51 9e-06
>ref|NP_680598.1| similar to S-locus protein 4-like; protein id: At4g04885.1
[Arabidopsis thaliana]
Length = 831
Score = 65.1 bits (157), Expect = 6e-10
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = -1
Query: 519 DKKTDGSQWDTMVLADENPCLCVFCGELFEDVYCQEKDPWMFQGGVYLN-HSDSQLEMKS 343
+KK D D V ADE+ C CGE FED Y E + WM++G VY+N +S +M
Sbjct: 744 EKKDDE---DMAVPADEDQTSCALCGEPFEDFYSDETEEWMYKGAVYMNAPEESTTDMDK 800
Query: 342 RNVGPLVHARCLSEN 298
+GP+VHA+C E+
Sbjct: 801 SQLGPIVHAKCRPES 815
>gb|AAD03447.1| contains similarity to human PCF11p homolog (GB:AF046935)
[Arabidopsis thaliana]
Length = 827
Score = 65.1 bits (157), Expect = 6e-10
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = -1
Query: 519 DKKTDGSQWDTMVLADENPCLCVFCGELFEDVYCQEKDPWMFQGGVYLN-HSDSQLEMKS 343
+KK D D V ADE+ C CGE FED Y E + WM++G VY+N +S +M
Sbjct: 744 EKKDDE---DMAVPADEDQTSCALCGEPFEDFYSDETEEWMYKGAVYMNAPEESTTDMDK 800
Query: 342 RNVGPLVHARCLSEN 298
+GP+VHA+C E+
Sbjct: 801 SQLGPIVHAKCRPES 815
>ref|NP_565848.1| hypothetical protein; protein id: At2g36480.1 [Arabidopsis
thaliana] gi|20197927|gb|AAD24632.2| hypothetical
protein [Arabidopsis thaliana]
Length = 828
Score = 61.6 bits (148), Expect = 7e-09
Identities = 27/67 (40%), Positives = 38/67 (56%)
Frame = -1
Query: 483 VLADENPCLCVFCGELFEDVYCQEKDPWMFQGGVYLNHSDSQLEMKSRNVGPLVHARCLS 304
V ADE C C+ CGE+FED + QE WMF+G YL + + E GP+VH CL+
Sbjct: 754 VAADETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS----GPIVHTGCLT 809
Query: 303 ENPMSHI 283
+ + +
Sbjct: 810 TSSLQSL 816
>pir||C84781 hypothetical protein At2g36480 [imported] - Arabidopsis thaliana
Length = 984
Score = 61.6 bits (148), Expect = 7e-09
Identities = 27/67 (40%), Positives = 38/67 (56%)
Frame = -1
Query: 483 VLADENPCLCVFCGELFEDVYCQEKDPWMFQGGVYLNHSDSQLEMKSRNVGPLVHARCLS 304
V ADE C C+ CGE+FED + QE WMF+G YL + + E GP+VH CL+
Sbjct: 897 VAADETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS----GPIVHTGCLT 952
Query: 303 ENPMSHI 283
+ + +
Sbjct: 953 TSSLQSL 959
>emb|CAC81237.1| putative PCF11 protein [Brassica napus]
Length = 377
Score = 51.2 bits (121), Expect = 9e-06
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = -1
Query: 513 KTDGSQWDTMVLADENPCLCVFCGELFEDVYCQEKDPWMFQGGVYLNHSDSQLEMKSRNV 334
K + Q V ADEN +C C E E+ + E+D WM++ YLN + S
Sbjct: 297 KEEEKQQQRYVPADENQKMCALCLESLEEFFSHEEDDWMYRDAAYLNMNGS--------- 347
Query: 333 GPLVHARCLSE 301
GP+VH C+ E
Sbjct: 348 GPIVHVNCMPE 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,995,566
Number of Sequences: 1393205
Number of extensions: 11411560
Number of successful extensions: 30736
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 26219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29748
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
