Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001313A_C01 KMC001313A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568527.1| putative protein; protein id: At5g35560.1 [Arab... 112 2e-24
dbj|BAB08718.1| gb|AAD21756.1~gene_id:MOK9.21~strong similarity ... 112 2e-24
gb|AAM13020.1| unknown protein [Arabidopsis thaliana] gi|2319836... 89 3e-17
ref|NP_179622.1| unknown protein; protein id: At2g20320.1 [Arabi... 66 2e-10
ref|ZP_00116692.1| hypothetical protein [Cytophaga hutchinsonii] 38 0.069
>ref|NP_568527.1| putative protein; protein id: At5g35560.1 [Arabidopsis thaliana]
Length = 750
Score = 112 bits (281), Expect = 2e-24
Identities = 56/67 (83%), Positives = 61/67 (90%)
Frame = -3
Query: 489 SYLDSLSGNIRSHTITHVQSNDDKVSLLLKESYIDSFPYRDRAFMKLFVDTQLFSVHTDL 310
SYLDSL N++SHTIT+VQSN+DKVSLLLKES+IDSFP R R FMKLFVDTQLFSVHTDL
Sbjct: 683 SYLDSLCSNLQSHTITNVQSNNDKVSLLLKESFIDSFPSRQRPFMKLFVDTQLFSVHTDL 742
Query: 309 VLSFFQK 289
VLSF QK
Sbjct: 743 VLSFIQK 749
>dbj|BAB08718.1| gb|AAD21756.1~gene_id:MOK9.21~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 722
Score = 112 bits (281), Expect = 2e-24
Identities = 56/67 (83%), Positives = 61/67 (90%)
Frame = -3
Query: 489 SYLDSLSGNIRSHTITHVQSNDDKVSLLLKESYIDSFPYRDRAFMKLFVDTQLFSVHTDL 310
SYLDSL N++SHTIT+VQSN+DKVSLLLKES+IDSFP R R FMKLFVDTQLFSVHTDL
Sbjct: 655 SYLDSLCSNLQSHTITNVQSNNDKVSLLLKESFIDSFPSRQRPFMKLFVDTQLFSVHTDL 714
Query: 309 VLSFFQK 289
VLSF QK
Sbjct: 715 VLSFIQK 721
>gb|AAM13020.1| unknown protein [Arabidopsis thaliana] gi|23198366|gb|AAN15710.1|
unknown protein [Arabidopsis thaliana]
Length = 441
Score = 89.0 bits (219), Expect = 3e-17
Identities = 44/65 (67%), Positives = 54/65 (82%)
Frame = -3
Query: 486 YLDSLSGNIRSHTITHVQSNDDKVSLLLKESYIDSFPYRDRAFMKLFVDTQLFSVHTDLV 307
Y++SL ++ SHTIT VQSN D+VSLLLK+S+IDSFP RDR F+KLFVDTQLFSV +D
Sbjct: 373 YMESLCSDLHSHTITSVQSNSDRVSLLLKDSFIDSFPGRDRPFIKLFVDTQLFSVLSDSR 432
Query: 306 LSFFQ 292
LS F+
Sbjct: 433 LSSFE 437
>ref|NP_179622.1| unknown protein; protein id: At2g20320.1 [Arabidopsis thaliana]
gi|25371301|pir||G84587 hypothetical protein At2g20320
[imported] - Arabidopsis thaliana
gi|4512703|gb|AAD21756.1| unknown protein [Arabidopsis
thaliana]
Length = 976
Score = 65.9 bits (159), Expect = 2e-10
Identities = 30/46 (65%), Positives = 39/46 (84%)
Frame = -3
Query: 486 YLDSLSGNIRSHTITHVQSNDDKVSLLLKESYIDSFPYRDRAFMKL 349
Y++SL ++ SHTIT VQSN D+VSLLLK+S+IDSFP RDR F+K+
Sbjct: 920 YMESLCSDLHSHTITSVQSNSDRVSLLLKDSFIDSFPGRDRPFIKV 965
>ref|ZP_00116692.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 146
Score = 37.7 bits (86), Expect = 0.069
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = -3
Query: 477 SLSGNIRSHTI----THVQSNDDKVSLLLKESYIDSFPYRDRAFMKLFVDTQLFSVHTDL 310
+L N++ H + T+V S+ LL I + PY D K+F D QL
Sbjct: 56 TLPENLKKHGVEFGKTYVTSDSIGTDNLLMVYVIFNKPYTDTLVAKVFDDNQLEMGRVSA 115
Query: 309 VLSFFQKE*DWNAIHYGNIVAIESLNASSV 220
V+S FQ E + A H+ I+S N +V
Sbjct: 116 VVSGFQNEAKFVAFHFDKRTNIDSKNTLTV 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,691,659
Number of Sequences: 1393205
Number of extensions: 8480556
Number of successful extensions: 18198
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18133
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
