Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001312A_C01 KMC001312A_c01
(697 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM08829.1|AC113335_9 Putative SCARECROW gene regulator-like ... 163 2e-39
ref|NP_178566.1| putative SCARECROW gene regulator; protein id: ... 156 2e-37
dbj|BAC42147.1| putative SCARECROW gene regulator [Arabidopsis t... 154 1e-36
ref|NP_199626.1| SCARECROW gene regulator-like; protein id: At5g... 154 1e-36
gb|AAL61821.1| chitin-inducible gibberellin-responsive protein [... 143 2e-33
>gb|AAM08829.1|AC113335_9 Putative SCARECROW gene regulator-like [Oryza sativa (japonica
cultivar-group)]
Length = 524
Score = 163 bits (413), Expect = 2e-39
Identities = 76/106 (71%), Positives = 88/106 (82%)
Frame = -2
Query: 696 MFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKP 517
MFESIDVA PRDDK+R+SAEQHCVARDIVN++ACEGAERVERHE+FGKWK R +MAGF+P
Sbjct: 418 MFESIDVALPRDDKRRMSAEQHCVARDIVNLIACEGAERVERHEVFGKWKARLTMAGFRP 477
Query: 516 WPLSSSVMTATQNLLRDFNHNYRLEQRDGALCLGWMKRALVTSSAW 379
+PLSS V + + LL +N YRLE+RDG L LGW R LV SSAW
Sbjct: 478 YPLSSVVNSTIKTLLHTYNSFYRLEERDGVLYLGWKNRVLVVSSAW 523
>ref|NP_178566.1| putative SCARECROW gene regulator; protein id: At2g04890.1,
supported by cDNA: gi_6644391 [Arabidopsis thaliana]
gi|25366592|pir||G84462 probable SCARECROW gene
regulator [imported] - Arabidopsis thaliana
gi|4585920|gb|AAD25580.1| putative SCARECROW gene
regulator [Arabidopsis thaliana]
gi|6644392|gb|AAF21044.1|AF210732_1 scarecrow-like 21
[Arabidopsis thaliana] gi|20197984|gb|AAM15339.1|
putative SCARECROW gene regulator [Arabidopsis thaliana]
Length = 413
Score = 156 bits (395), Expect = 2e-37
Identities = 70/107 (65%), Positives = 89/107 (82%)
Frame = -2
Query: 696 MFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKP 517
MFESIDV PR+ K+RI+ EQHC+ARD+VN++ACEGAER+ERHEL GKWK RFSMAGF+P
Sbjct: 307 MFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEP 366
Query: 516 WPLSSSVMTATQNLLRDFNHNYRLEQRDGALCLGWMKRALVTSSAWR 376
+PLSS + + LLRD+++ Y +E+RDGAL LGWM R LV+S AW+
Sbjct: 367 YPLSSIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK 413
>dbj|BAC42147.1| putative SCARECROW gene regulator [Arabidopsis thaliana]
Length = 411
Score = 154 bits (389), Expect = 1e-36
Identities = 70/107 (65%), Positives = 87/107 (80%)
Frame = -2
Query: 696 MFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKP 517
MFESIDV PRD K+RI+ EQHC+ARD+VN++ACEGA+RVERHEL GKW+ RF MAGF P
Sbjct: 305 MFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTP 364
Query: 516 WPLSSSVMTATQNLLRDFNHNYRLEQRDGALCLGWMKRALVTSSAWR 376
+PLS V + ++LLR+++ YRLE+RDGAL LGWM R LV S AW+
Sbjct: 365 YPLSPLVNSTIKSLLRNYSDKYRLEERDGALYLGWMHRDLVASCAWK 411
>ref|NP_199626.1| SCARECROW gene regulator-like; protein id: At5g48150.1, supported
by cDNA: gi_8132288 [Arabidopsis thaliana]
gi|8132289|gb|AAF73237.1|AF153443_1 phytochrome A signal
transduction 1 protein [Arabidopsis thaliana]
gi|8777405|dbj|BAA96995.1| SCARECROW gene regulator-like
[Arabidopsis thaliana]
Length = 490
Score = 154 bits (389), Expect = 1e-36
Identities = 70/107 (65%), Positives = 87/107 (80%)
Frame = -2
Query: 696 MFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKP 517
MFESIDV PRD K+RI+ EQHC+ARD+VN++ACEGA+RVERHEL GKW+ RF MAGF P
Sbjct: 384 MFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTP 443
Query: 516 WPLSSSVMTATQNLLRDFNHNYRLEQRDGALCLGWMKRALVTSSAWR 376
+PLS V + ++LLR+++ YRLE+RDGAL LGWM R LV S AW+
Sbjct: 444 YPLSPLVNSTIKSLLRNYSDKYRLEERDGALYLGWMHRDLVASCAWK 490
>gb|AAL61821.1| chitin-inducible gibberellin-responsive protein [Oryza sativa
(japonica cultivar-group)] gi|27817840|dbj|BAC55608.1|
OJ1127_E01.12 [Oryza sativa (japonica cultivar-group)]
Length = 544
Score = 143 bits (361), Expect = 2e-33
Identities = 65/106 (61%), Positives = 83/106 (77%)
Frame = -2
Query: 696 MFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKP 517
+FESID+ PRDD++RI+ EQHC+AR+IVN++ACEG ER ER+E FGKWK R +MAGF+P
Sbjct: 438 IFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRP 497
Query: 516 WPLSSSVMTATQNLLRDFNHNYRLEQRDGALCLGWMKRALVTSSAW 379
PLSS V + LL+ ++ NY+L +RDGAL LGW R LV SSAW
Sbjct: 498 SPLSSLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,397,753
Number of Sequences: 1393205
Number of extensions: 12020271
Number of successful extensions: 32278
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 31073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32205
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
