Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001310A_C01 KMC001310A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_347006.1| Predicted permease [Clostridium acetobutylicum]... 37 0.27
ref|XP_226446.1| similar to 60S ribosomal protein L21 [Rattus no... 36 0.61
sp|P29085|YFUS_PYRWO Hypothetical 12.3 kDa protein in FUS 3'regi... 35 1.4
ref|NP_579742.1| hypothetical protein [Pyrococcus furiosus DSM 3... 35 1.4
ref|NP_191461.1| putative protein; protein id: At3g59020.1 [Arab... 34 1.8
>ref|NP_347006.1| Predicted permease [Clostridium acetobutylicum]
gi|25500458|pir||G96944 probable permease [imported] -
Clostridium acetobutylicum
gi|15023214|gb|AAK78346.1|AE007551_5 Predicted permease
[Clostridium acetobutylicum]
Length = 301
Score = 37.0 bits (84), Expect = 0.27
Identities = 22/90 (24%), Positives = 48/90 (52%), Gaps = 1/90 (1%)
Frame = -2
Query: 341 VLCLFSPIT*TGKVKSPMVLVIFVEGQSVLKIHCIFSLFWS*FFWVESIIPVLIKG*VLG 162
+L S + G + P++ V++ G + IF+L ++ F W I+ + K +
Sbjct: 95 ILMFMSIFSNCGFIGFPVLKVVY--GNKGVLYTSIFNLVYNVFIWTIGIVIINDKREKID 152
Query: 161 YEK-LFNSDVVTIIYAFFIGLNTLRVPEIV 75
Y+K LFN +++ +I F+ L ++++P ++
Sbjct: 153 YKKILFNHNIIAVIVGVFLMLLSIKIPYVM 182
>ref|XP_226446.1| similar to 60S ribosomal protein L21 [Rattus norvegicus]
Length = 105
Score = 35.8 bits (81), Expect = 0.61
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 343 HK*GALLP*SKNRQELPYVGNNETDNSTITWTLEGRTTKNGERKGMGTFIQLQRDP 510
HK G+ P + R + + N ++ + ++ W E + K E KG GT++QL+R P
Sbjct: 23 HKYGSEHPKALGRCAMGIIANKQSRDGSLKWVKE-KDQKKKEAKGKGTWVQLKRQP 77
>sp|P29085|YFUS_PYRWO Hypothetical 12.3 kDa protein in FUS 3'region gi|99236|pir||S23865
hypothetical protein (fus 3' region) - Pyrococcus woesei
gi|45951|emb|CAA47642.1| ORF [Pyrococcus woesei]
Length = 106
Score = 34.7 bits (78), Expect = 1.4
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2
Query: 137 VVTIIYAFFIGLNTLRVPEIVPRTKISP*KFFFRFQIPEIVF 12
V T++YA +G+ TL V +++ R KI FFR IP ++F
Sbjct: 26 VNTLVYAIILGIATLLVYKVLKRLKIEINNAFFRALIPYMIF 67
>ref|NP_579742.1| hypothetical protein [Pyrococcus furiosus DSM 3638]
gi|18894223|gb|AAL82137.1| hypothetical protein
[Pyrococcus furiosus DSM 3638]
Length = 267
Score = 34.7 bits (78), Expect = 1.4
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2
Query: 137 VVTIIYAFFIGLNTLRVPEIVPRTKISP*KFFFRFQIPEIVF 12
V T++YA +G+ TL V +++ R KI FFR IP ++F
Sbjct: 23 VNTLVYAIILGIATLLVYKVLKRLKIEINNAFFRALIPYMIF 64
>ref|NP_191461.1| putative protein; protein id: At3g59020.1 [Arabidopsis thaliana]
gi|11357522|pir||T47784 hypothetical protein F17J16.70 -
Arabidopsis thaliana gi|7529745|emb|CAB86930.1| putative
protein [Arabidopsis thaliana]
Length = 1112
Score = 34.3 bits (77), Expect = 1.8
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3
Query: 709 ELRRAEIEKEKLEKSSSATTDS 644
ELRRAEI KEKLEK SSAT S
Sbjct: 1091 ELRRAEILKEKLEKQSSATVAS 1112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,587,874
Number of Sequences: 1393205
Number of extensions: 13267554
Number of successful extensions: 27592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27586
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
