Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001307A_C01 KMC001307A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194988.1| putative protein; protein id: At4g32620.1 [Arab... 47 2e-04
dbj|BAB07963.1| P0406H10.15 [Oryza sativa (japonica cultivar-gro... 39 0.034
ref|NP_196087.1| putative protein; protein id: At5g04670.1 [Arab... 35 0.83
ref|ZP_00118818.1| hypothetical protein [Cytophaga hutchinsonii] 32 4.1
ref|NP_350005.1| ABC-type multidrug/protein/lipid transport syst... 32 5.4
>ref|NP_194988.1| putative protein; protein id: At4g32620.1 [Arabidopsis thaliana]
gi|7486409|pir||T04464 hypothetical protein F4D11.180 -
Arabidopsis thaliana gi|3063708|emb|CAA18599.1| putative
protein [Arabidopsis thaliana] gi|7270166|emb|CAB79979.1|
putative protein [Arabidopsis thaliana]
Length = 1544
Score = 46.6 bits (109), Expect = 2e-04
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = -2
Query: 560 RQRAQRLHYRADLAIHKAVVALMAAEAMKGSEDSVGDSS 444
R+RA+ L Y+ADLAI KA ALM AEA+K S + +G+++
Sbjct: 1498 RERAESLRYKADLAIQKAAAALMCAEAVKASSEDLGNNN 1536
>dbj|BAB07963.1| P0406H10.15 [Oryza sativa (japonica cultivar-group)]
Length = 1656
Score = 39.3 bits (90), Expect = 0.034
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = -2
Query: 560 RQRAQRLHYRADLAIHKAVVALMAAEAMKGS 468
R++A L ++ADLA+HKA VALM A+A+K S
Sbjct: 1611 REKAHLLMHKADLALHKATVALMMADAIKAS 1641
>ref|NP_196087.1| putative protein; protein id: At5g04670.1 [Arabidopsis thaliana]
gi|11358103|pir||T48463 hypothetical protein T1E3.30 -
Arabidopsis thaliana gi|7413529|emb|CAB86009.1| putative
protein [Arabidopsis thaliana]
Length = 766
Score = 34.7 bits (78), Expect = 0.83
Identities = 19/39 (48%), Positives = 27/39 (68%)
Frame = -2
Query: 560 RQRAQRLHYRADLAIHKAVVALMAAEAMKGSEDSVGDSS 444
R+RAQ L ADLA++KA+ AL AEA+K +E D++
Sbjct: 726 RRRAQILAENADLAVYKAMRALRIAEAIKEAESREVDTT 764
>ref|ZP_00118818.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 434
Score = 32.3 bits (72), Expect = 4.1
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Frame = -1
Query: 372 AIRFGIVFVRHGIWFTL------SRVVAF------CHFARYCLHESRVQ*GGGDFVAAKF 229
A+ G VF H I+F + +R++ Y +H+S++ G GDF F
Sbjct: 250 AMSVGFVFGVHKIFFEILQEHQRNRIMVLFDTELDIRDVGYHVHQSKIAIGSGDFFGKGF 309
Query: 228 ISRSLSSRNFSSLRSAQFINCCI-DRHG 148
+ + + +F +S FI C I + HG
Sbjct: 310 LEGTQTKFDFVPEQSTDFIFCTIGEEHG 337
>ref|NP_350005.1| ABC-type multidrug/protein/lipid transport system, ATPase component
[Clostridium acetobutylicum] gi|25307388|pir||F97319
ABC-type multidrug/protein/lipid transport system,
ATPase component CAC3415 [imported] - Clostridium
acetobutylicum gi|15026502|gb|AAK81345.1|AE007838_9
ABC-type multidrug/protein/lipid transport system,
ATPase component [Clostridium acetobutylicum]
Length = 627
Score = 32.0 bits (71), Expect = 5.4
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 369 LLASSHLHSKPGRMLEFFRASGTCGTTITNRVLRTFHCFSSHKSNHSLVN 518
+L S +L++KPG + F A+G TTITN + R F+ ++ K + +N
Sbjct: 403 ILHSINLYAKPGEKVAFVGATGAGKTTITNLINR-FYDINAGKIRYDGIN 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,853,761
Number of Sequences: 1393205
Number of extensions: 9663883
Number of successful extensions: 22458
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22453
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
