Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001306A_C01 KMC001306A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL91203.1| putative C2H2-type zinc finger protein [Arabidops... 41 0.010
ref|NP_178316.1| putative C2H2-type zinc finger protein; protein... 41 0.010
gb|AAB03236.1| homeotic protein 34 0.98
ref|NP_651554.1| CG3361-PA [Drosophila melanogaster] gi|7301574|... 33 1.7
dbj|BAA94774.1| unnamed protein product [Oryza sativa (japonica ... 33 2.2
>gb|AAL91203.1| putative C2H2-type zinc finger protein [Arabidopsis thaliana]
Length = 602
Score = 40.8 bits (94), Expect = 0.010
Identities = 26/62 (41%), Positives = 35/62 (55%), Gaps = 10/62 (16%)
Frame = -3
Query: 531 TRDFLGVGQIVRSMSGGG---------QREQQHAFNALEAERNAAAATAAP-SGQSFGGG 382
TRDFLGVGQIV+SMSG G Q++QQ + ER +++ +A S + G
Sbjct: 526 TRDFLGVGQIVKSMSGSGGFQQQQQQQQQQQQQQQHGNSRERVGSSSDSADRSSMNVNTG 585
Query: 381 GG 376
GG
Sbjct: 586 GG 587
>ref|NP_178316.1| putative C2H2-type zinc finger protein; protein id: At2g02070.1,
supported by cDNA: gi_15810270, supported by cDNA:
gi_19698934 [Arabidopsis thaliana]
gi|25410959|pir||F84432 probable C2H2-type zinc finger
protein [imported] - Arabidopsis thaliana
gi|4038043|gb|AAC97225.1| putative C2H2-type zinc finger
protein [Arabidopsis thaliana]
gi|15810271|gb|AAL07023.1| putative C2H2-type zinc
finger protein [Arabidopsis thaliana]
gi|24899775|gb|AAN65102.1| putative C2H2-type zinc
finger protein [Arabidopsis thaliana]
Length = 602
Score = 40.8 bits (94), Expect = 0.010
Identities = 26/62 (41%), Positives = 35/62 (55%), Gaps = 10/62 (16%)
Frame = -3
Query: 531 TRDFLGVGQIVRSMSGGG---------QREQQHAFNALEAERNAAAATAAP-SGQSFGGG 382
TRDFLGVGQIV+SMSG G Q++QQ + ER +++ +A S + G
Sbjct: 526 TRDFLGVGQIVKSMSGSGGFQQQQQQQQQQQQQQQHGNSRERVGSSSDSADRSSMNVNTG 585
Query: 381 GG 376
GG
Sbjct: 586 GG 587
>gb|AAB03236.1| homeotic protein
Length = 331
Score = 34.3 bits (77), Expect = 0.98
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = -3
Query: 492 MSGGGQREQQHAFNALEAERNAAAATAAPSGQSFGGGG 379
M GGGQ +A L+A AAAA AA +G GGGG
Sbjct: 96 MGGGGQTPVVYASCKLQAAAAAAAAAAAGNGGGAGGGG 133
>ref|NP_651554.1| CG3361-PA [Drosophila melanogaster] gi|7301574|gb|AAF56694.1|
CG3361-PA [Drosophila melanogaster]
Length = 775
Score = 33.5 bits (75), Expect = 1.7
Identities = 25/84 (29%), Positives = 40/84 (46%), Gaps = 4/84 (4%)
Frame = -1
Query: 449 LWRQREMLLLLQLRRQGNLLEVVE--GIFSDKANHQ--KVIENKGISACSIDCQAHLVKA 282
LW + EML +L + + N LE + + S++ Q +V+ +KG VK
Sbjct: 122 LWSRAEMLEMLSIMQNLNALEQLNDRNMKSEQVFRQIEEVMRSKGF-----------VKK 170
Query: 281 FEISIWEAWEYLDFIINRTTKN*T 210
I IW W++L N TT++ T
Sbjct: 171 SSIQIWTKWKFLKSTYNTTTRHGT 194
>dbj|BAA94774.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1385
Score = 33.1 bits (74), Expect = 2.2
Identities = 27/78 (34%), Positives = 37/78 (46%), Gaps = 10/78 (12%)
Frame = +2
Query: 320 LKSLCSQLLSDDLLCH*KFPPPPPKDCPDGAAVAAA----AFLSASKALKACCCSLCPP- 484
++ L +LL D L+ H FP PPP+ P GAA AAA A++ A A C+ P
Sbjct: 6 IRKLREELL-DKLIAHATFPHPPPQ-IPVGAAAAAATDAIAWICAPVVAAAWICAPASPV 63
Query: 485 -----PLMLLTI*PTPRK 523
P L + P P +
Sbjct: 64 PDGVSPSCLRAVPPPPNR 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,626,352
Number of Sequences: 1393205
Number of extensions: 9884368
Number of successful extensions: 36420
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35248
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
