Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001305A_C01 KMC001305A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC19877.1| long chain acyl-CoA synthetase [Brassica napus] 92 4e-18
gb|AAO22689.1| putative acyl-CoA synthetase [Arabidopsis thaliana] 91 1e-17
ref|NP_177882.1| putative acyl-CoA synthetase; protein id: At1g7... 91 1e-17
ref|NP_178516.1| putative acyl-CoA synthetase; protein id: At2g0... 80 1e-14
gb|AAK96568.1| T23O15.3/T23O15.3 [Arabidopsis thaliana] 80 1e-14
>emb|CAC19877.1| long chain acyl-CoA synthetase [Brassica napus]
Length = 693
Score = 92.0 bits (227), Expect = 4e-18
Identities = 44/56 (78%), Positives = 51/56 (90%)
Frame = -2
Query: 416 LQEAKKARLEKFEIPAKIKVLSDPWTPETGLVTAALKLKRDIIRKTFQEDLAKLYA 249
++ AK++RLEKFEIPAKIKVL+ PWTPE+GLVTAALKLKRD+IRK F EDL KLYA
Sbjct: 637 VKAAKQSRLEKFEIPAKIKVLAAPWTPESGLVTAALKLKRDVIRKEFSEDLTKLYA 692
>gb|AAO22689.1| putative acyl-CoA synthetase [Arabidopsis thaliana]
Length = 399
Score = 90.5 bits (223), Expect = 1e-17
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = -2
Query: 416 LQEAKKARLEKFEIPAKIKVLSDPWTPETGLVTAALKLKRDIIRKTFQEDLAKLYA 249
++ AK++RLEKFEIPAKIK+L+ PWTPE+GLVTAALKLKRD+IR+ F EDL KLYA
Sbjct: 344 VKAAKQSRLEKFEIPAKIKLLASPWTPESGLVTAALKLKRDVIRREFSEDLTKLYA 399
>ref|NP_177882.1| putative acyl-CoA synthetase; protein id: At1g77590.1, supported by
cDNA: gi_20805878 [Arabidopsis thaliana]
gi|25293396|pir||D96805 probable acyl-CoA synthetase,
62297-59022 [imported] - Arabidopsis thaliana
gi|12323387|gb|AAG51668.1|AC010704_12 putative acyl-CoA
synthetase; 62297-59022 [Arabidopsis thaliana]
gi|20805879|gb|AAM28876.1|AF503759_1 long chain acyl-CoA
synthetase 9 [Arabidopsis thaliana]
Length = 691
Score = 90.5 bits (223), Expect = 1e-17
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = -2
Query: 416 LQEAKKARLEKFEIPAKIKVLSDPWTPETGLVTAALKLKRDIIRKTFQEDLAKLYA 249
++ AK++RLEKFEIPAKIK+L+ PWTPE+GLVTAALKLKRD+IR+ F EDL KLYA
Sbjct: 636 VKAAKQSRLEKFEIPAKIKLLASPWTPESGLVTAALKLKRDVIRREFSEDLTKLYA 691
>ref|NP_178516.1| putative acyl-CoA synthetase; protein id: At2g04350.1, supported by
cDNA: gi_15450592, supported by cDNA: gi_20805876
[Arabidopsis thaliana] gi|25293398|pir||E84456 probable
acyl-CoA synthetase [imported] - Arabidopsis thaliana
gi|4587615|gb|AAD25843.1| putative acyl-CoA synthetase
[Arabidopsis thaliana] gi|20198205|gb|AAM15458.1|
putative acyl-CoA synthetase [Arabidopsis thaliana]
gi|20805877|gb|AAM28875.1|AF503758_1 long chain acyl-CoA
synthetase 8 [Arabidopsis thaliana]
gi|25090427|gb|AAN72299.1| At2g04350/T23O15.3
[Arabidopsis thaliana]
Length = 720
Score = 80.5 bits (197), Expect = 1e-14
Identities = 36/52 (69%), Positives = 48/52 (92%)
Frame = -2
Query: 404 KKARLEKFEIPAKIKVLSDPWTPETGLVTAALKLKRDIIRKTFQEDLAKLYA 249
K A+LEKFE+PAKIK+LS+PWTPE+GLVTAALK+KR+ I+ F+++L+KLYA
Sbjct: 669 KAAKLEKFELPAKIKLLSEPWTPESGLVTAALKIKREQIKSKFKDELSKLYA 720
>gb|AAK96568.1| T23O15.3/T23O15.3 [Arabidopsis thaliana]
Length = 720
Score = 80.5 bits (197), Expect = 1e-14
Identities = 36/52 (69%), Positives = 48/52 (92%)
Frame = -2
Query: 404 KKARLEKFEIPAKIKVLSDPWTPETGLVTAALKLKRDIIRKTFQEDLAKLYA 249
K A+LEKFE+PAKIK+LS+PWTPE+GLVTAALK+KR+ I+ F+++L+KLYA
Sbjct: 669 KAAKLEKFELPAKIKLLSEPWTPESGLVTAALKIKREQIKSKFKDELSKLYA 720
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,097,286
Number of Sequences: 1393205
Number of extensions: 7217227
Number of successful extensions: 17815
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 17458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17813
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
