KMC001304A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC001304A_C01 KMC001304A_c01
agggggtcttattttGTGACTTAATTCACCTTTTTTGTATTCGTACTGTTACAAAGGATT
TAAGACACTCATTAGGTCCAAATGAAAATTTCGCTCTAATGGTTTGGATCTTACTTTACT
TTTAGTTGGACTCACATTACTAAATATATTGTTTATTTTACATTATCCCAAAGCATTAAT
GCTTCGTCCAGTTGATAAACTTCTTGAGATTGTTTGATGACTGACCACCTTCTGCTAAGT
TATTTATGGTTATTTCCTTCAGTTTCAGAGAGCCTTGCTTTCAAGTCTTCATTAACAATC
ACTTGCTCCACCTTCGTCCTTATCTCTCCCTTTGGTATTATTCCATTTTCATCTTTGTCT
AATCCAAGTCCAATCTTCCACACATCACAAATAAATGACTTGTTAAGAAATTGATCAGTG
GAAAATGGCCAACACAGGAAAGGCACACTAGCATGTACACCTTCTATGGTAGAGTTCCAA
CCACAGTGACTAATGAAGCAAGCTATAGCTGGGTGATTCAATATCTTCTTCTGAGGTCGC
CATTTGACAACTTTACCTTTACTTCCATGGAA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001304A_C01 KMC001304A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG25643.1|AF303396_1 UDP-glucosyltransferase HRA25 [Phaseolu... 149 5e-37
gb|AAK16175.1|AC079887_7 putative glucosyltransferase [Oryza sat... 135 2e-33
ref|NP_186859.1| putative UDP-glucosyl transferase; protein id: ... 126 5e-33
gb|AAM47593.1| putative glucosyl transferase [Sorghum bicolor] 138 6e-32
gb|AAM47590.1| putative glucosyl transferase [Sorghum bicolor] 128 5e-31
>gb|AAG25643.1|AF303396_1 UDP-glucosyltransferase HRA25 [Phaseolus vulgaris]
Length = 462
Score = 149 bits (375), Expect(2) = 5e-37
Identities = 59/100 (59%), Positives = 82/100 (82%)
Frame = -1
Query: 572 FHGSKGKVVKWRPQKKILNHPAIACFISHCGWNSTIEGVHASVPFLCWPFSTDQFLNKSF 393
F G KGK+V W PQ+K+L+HPAIACF++HCGWNST+EG+ + VP LCWP+ DQ NK+
Sbjct: 332 FQGHKGKIVNWAPQQKVLSHPAIACFVTHCGWNSTMEGLSSGVPLLCWPYFGDQLYNKAH 391
Query: 392 ICDVWKIGLGLDKDENGIIPKGEIRTKVEQVIVNEDLKAR 273
ICD K+GLG+DKD+NG++ +GE++TKVEQ+ +E++K R
Sbjct: 392 ICDELKVGLGIDKDQNGVVSRGELKTKVEQIFNDENIKFR 431
Score = 27.3 bits (59), Expect(2) = 5e-37
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -2
Query: 262 LKEITINNLAEGGQSSNNLKKFINWTK 182
LKE + N+A+GG S N K F+ K
Sbjct: 435 LKEKVMKNIAKGGTSYENFKNFVKEIK 461
>gb|AAK16175.1|AC079887_7 putative glucosyltransferase [Oryza sativa]
Length = 457
Score = 135 bits (339), Expect(2) = 2e-33
Identities = 53/99 (53%), Positives = 78/99 (78%)
Frame = -1
Query: 560 KGKVVKWRPQKKILNHPAIACFISHCGWNSTIEGVHASVPFLCWPFSTDQFLNKSFICDV 381
KG +V W PQ+ +L+HP+IACF+SHCGWNST+EG+ VPFLCWP+ DQ+ N+S+IC+V
Sbjct: 330 KGMIVGWAPQQSVLSHPSIACFVSHCGWNSTMEGLRHGVPFLCWPYFADQYCNQSYICNV 389
Query: 380 WKIGLGLDKDENGIIPKGEIRTKVEQVIVNEDLKARLSE 264
W G+ L DE G++ K EI+ KVEQ++ ++++KAR ++
Sbjct: 390 WGTGVKLQADERGVVTKEEIKNKVEQLVDDKEIKARAAK 428
Score = 28.9 bits (63), Expect(2) = 2e-33
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 280 KQGSLKLKEITINNLAEGGQSSNNLKKFIN 191
K + K K ++AEGG S NL KF+N
Sbjct: 423 KARAAKWKHAACTSIAEGGSSHENLLKFVN 452
>ref|NP_186859.1| putative UDP-glucosyl transferase; protein id: At3g02100.1
[Arabidopsis thaliana]
gi|6513946|gb|AAF14850.1|AC011664_32 putative
UDP-glucosyl transferase [Arabidopsis thaliana]
Length = 464
Score = 126 bits (317), Expect(2) = 5e-33
Identities = 47/86 (54%), Positives = 71/86 (81%)
Frame = -1
Query: 554 KVVKWRPQKKILNHPAIACFISHCGWNSTIEGVHASVPFLCWPFSTDQFLNKSFICDVWK 375
KVV+W PQ+++L+ AI CF+SHCGWNST+EG +PFLC P+ DQF+NK++ICDVWK
Sbjct: 336 KVVRWAPQREVLSSGAIGCFVSHCGWNSTLEGAQNGIPFLCIPYFADQFINKAYICDVWK 395
Query: 374 IGLGLDKDENGIIPKGEIRTKVEQVI 297
IGLGL++D G++P+ E++ K+++++
Sbjct: 396 IGLGLERDARGVVPRLEVKKKIDEIM 421
Score = 36.2 bits (82), Expect(2) = 5e-33
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -2
Query: 280 KQGSLKLKEITINNLAEGGQSSNNLKKFINWTK 182
++ ++K+KEI + ++A+ G S NL KF+NW K
Sbjct: 428 EERAMKVKEIVMKSVAKDGISCENLNKFVNWIK 460
>gb|AAM47593.1| putative glucosyl transferase [Sorghum bicolor]
Length = 457
Score = 138 bits (347), Expect = 6e-32
Identities = 56/98 (57%), Positives = 76/98 (77%)
Frame = -1
Query: 566 GSKGKVVKWRPQKKILNHPAIACFISHCGWNSTIEGVHASVPFLCWPFSTDQFLNKSFIC 387
G KG VV W PQ+++L+HP++ACFISHCGWNST+EGV VPFLCWP+ DQF+N+++IC
Sbjct: 328 GDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQFMNQNYIC 387
Query: 386 DVWKIGLGLDKDENGIIPKGEIRTKVEQVIVNEDLKAR 273
D W GL +D DE GI K EIR KV+Q++ ++ ++ R
Sbjct: 388 DAWGTGLRIDADERGIFTKEEIRDKVDQLLGDDGIRTR 425
>gb|AAM47590.1| putative glucosyl transferase [Sorghum bicolor]
Length = 459
Score = 128 bits (321), Expect(2) = 5e-31
Identities = 51/100 (51%), Positives = 77/100 (77%)
Frame = -1
Query: 566 GSKGKVVKWRPQKKILNHPAIACFISHCGWNSTIEGVHASVPFLCWPFSTDQFLNKSFIC 387
G +G +V W PQ+++L H A+ACF+SHCGWNST+EGV +VPFLCWP+ TDQF N+S+IC
Sbjct: 329 GGRGMIVSWCPQQQVLAHRAVACFVSHCGWNSTMEGVRNAVPFLCWPYFTDQFQNESYIC 388
Query: 386 DVWKIGLGLDKDENGIIPKGEIRTKVEQVIVNEDLKARLS 267
+VW+ GL + +G++ K E+ KVE+V+ ++ ++ R+S
Sbjct: 389 NVWRTGLAVAPGPDGVVTKEELSGKVERVLGDDGIRERVS 428
Score = 28.1 bits (61), Expect(2) = 5e-31
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 262 LKEITINNLAEGGQSSNNLKKFINWTK 182
L++ ++AEGG S +N KKF+ K
Sbjct: 430 LRDAACRSIAEGGSSRDNFKKFVELLK 456
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,163,021
Number of Sequences: 1393205
Number of extensions: 9583307
Number of successful extensions: 28853
Number of sequences better than 10.0: 700
Number of HSP's better than 10.0 without gapping: 28391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28847
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GNf068a08 |
BP072383 |
1 |
388 |
2 |
GENf059h02 |
BP060875 |
16 |
467 |
3 |
GENLf073f09 |
BP066309 |
40 |
573 |
4 |
GNLf007b09 |
BP075197 |
74 |
562 |
|
Lotus japonicus
Kazusa DNA Research Institute