Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001303A_C02 KMC001303A_c02
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10782.1| B1096D03.15 [Oryza sativa (japonica cultivar-gro... 40 0.015
dbj|BAB01200.1| gene_id:MTO24.18~unknown protein [Arabidopsis th... 40 0.026
ref|NP_200770.1| putative protein; protein id: At5g59620.1 [Arab... 37 0.22
dbj|BAA94227.1| unnamed protein product [Oryza sativa (japonica ... 36 0.29
pir||A57075 tensin - chicken (fragment) gi|63805|emb|CAA79215.1|... 34 1.1
>dbj|BAC10782.1| B1096D03.15 [Oryza sativa (japonica cultivar-group)]
Length = 436
Score = 40.4 bits (93), Expect = 0.015
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Frame = -2
Query: 559 DGSFVNEEAKQKSDLLEKELEKNCSEEAAYVKVFGKDRSGYVRGLGFGVCP--------S 404
DG +VN+ ++K ++ + E ++VFGKD SG VRG+G + P S
Sbjct: 280 DGRYVNDATEEKMKRVDGQELSEADFEQNILEVFGKDHSGRVRGMGPTITPTNYYGGRFS 339
Query: 403 QVLESASRSSSSPFAGITLAEWNAMKSELPESH 305
+ S+ SSSS G + + + PE +
Sbjct: 340 NISGSSEGSSSSNVNGFISFIVSYLAEKYPEDN 372
>dbj|BAB01200.1| gene_id:MTO24.18~unknown protein [Arabidopsis thaliana]
Length = 317
Score = 39.7 bits (91), Expect = 0.026
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Frame = -2
Query: 565 KSDGSFVNEEAKQKSDLLEKELEKNCSEEA-----------AYVKVFGKDRSGYVRGLGF 419
KSD S + EA+ D L + + +N +EA A+ +VFG + SG VR +G
Sbjct: 152 KSDESLLCNEARFTLDKLSQVMTQNIQDEASETSTESRPYDAFEQVFGYEPSGRVRCMGR 211
Query: 418 GVCPSQVLESASRSSSSPFAGITLAEWNAMKSELPESHAKFQALEERMN 272
GV PS+ L + +S+ +E+ E + + LEE+++
Sbjct: 212 GVTPSKYLLNHESMTSN--------------TEILEMKTRLKGLEEKLD 246
>ref|NP_200770.1| putative protein; protein id: At5g59620.1 [Arabidopsis thaliana]
gi|9758829|dbj|BAB09501.1| contains similarity to
En/Spm-like transposon protein~gene_id:MTH12.16
[Arabidopsis thaliana]
Length = 312
Score = 36.6 bits (83), Expect = 0.22
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
Frame = -2
Query: 565 KSDGSFVNEEAKQKSDLLEKELEK-------------------NCSEEAAYVKVFGKDRS 443
K DGS+V++ A+ +D EK +++ N + Y+K G +
Sbjct: 181 KPDGSYVDQRARLVADTYEKHVQERLGQLESAGEENLRAETLDNHEKNEIYIKAAGSSKH 240
Query: 442 GYVRGLGFGVCPSQVLESASRSSSSPFAG-----IT--LAEWNAMKSELPESHAKFQALE 284
G++ GLG + L S SSS+P A IT L E + E + + Q
Sbjct: 241 GHIFGLG---ALMETLPSVGASSSAPQASEEVETITHRLQEMETDLKKSLEENLQIQKRL 297
Query: 283 ERMNSFMQPFGGQ 245
E M ++ F Q
Sbjct: 298 EAMEKLVETFASQ 310
>dbj|BAA94227.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 184
Score = 36.2 bits (82), Expect = 0.29
Identities = 23/61 (37%), Positives = 36/61 (58%), Gaps = 9/61 (14%)
Frame = -2
Query: 559 DGSFVNEEAKQKSD-----LLEKELE-KNCSE---EAAYVKVFGKDRSGYVRGLGFGVCP 407
DG +VN+ + K + L EK ++ + SE E A ++VFGKD +G VRG+G + P
Sbjct: 114 DGRYVNDATQDKMNEVYMKLAEKRVDGQELSEADFEQAMLEVFGKDHNGRVRGMGPTITP 173
Query: 406 S 404
+
Sbjct: 174 T 174
>pir||A57075 tensin - chicken (fragment) gi|63805|emb|CAA79215.1| tensin [Gallus
gallus] gi|212755|gb|AAA73949.1| tensin
Length = 1792
Score = 34.3 bits (77), Expect = 1.1
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 397 LESASRSSSSPFAGITLAEWNAMKSELP-ESHAKFQALEERMNSFMQPFGGQGPPNQVH 224
L SA RS S P G E N + P S + +A++ +NS+ Q GG PP+Q+H
Sbjct: 748 LPSAHRSQSFPAVGTAKYEANLALPQAPARSTSSREAVQRGLNSWQQQ-GGSRPPSQLH 805
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,507,637
Number of Sequences: 1393205
Number of extensions: 10801379
Number of successful extensions: 27169
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27153
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
