Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001302A_C02 KMC001302A_c02
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188660.2| pumilio-family RNA-binding protein, putative; p... 49 5e-05
ref|NP_180478.1| pumilio-family RNA-binding protein, putative; p... 48 1e-04
gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein ... 48 1e-04
ref|NP_180482.1| pumilio-family RNA-binding protein, putative; p... 48 1e-04
dbj|BAB63677.1| P0518C01.14 [Oryza sativa (japonica cultivar-gro... 47 2e-04
>ref|NP_188660.2| pumilio-family RNA-binding protein, putative; protein id: At3g20250.1
[Arabidopsis thaliana] gi|9293981|dbj|BAB01884.1| RNA
binding protein-like [Arabidopsis thaliana]
Length = 962
Score = 49.3 bits (116), Expect = 5e-05
Identities = 23/47 (48%), Positives = 36/47 (75%), Gaps = 4/47 (8%)
Frame = -3
Query: 691 LLRSVLKIT----RALLLFRIRAHTHALKKYTFGKHLVARFEQLLGE 563
+++ VL+I+ R +L+ R++ H +L+KYT+GKH+VARFEQL GE
Sbjct: 905 VVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVARFEQLFGE 951
>ref|NP_180478.1| pumilio-family RNA-binding protein, putative; protein id: At2g29140.1
[Arabidopsis thaliana] gi|25354254|pir||A84693
hypothetical protein At2g29140 [imported] - Arabidopsis
thaliana gi|3980417|gb|AAC95220.1| putative pumilio/Mpt5
family RNA-binding protein [Arabidopsis thaliana]
Length = 964
Score = 48.1 bits (113), Expect = 1e-04
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = -3
Query: 664 RALLLFRIRAHTHALKKYTFGKHLVARFEQLLGEG 560
R L+L RI+ H +ALKKYT+GKH+VAR E+L+ G
Sbjct: 915 RELILTRIKVHLNALKKYTYGKHIVARVEKLVAAG 949
>gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana]
Length = 972
Score = 47.8 bits (112), Expect = 1e-04
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = -3
Query: 664 RALLLFRIRAHTHALKKYTFGKHLVARFEQLLGEG 560
R L+L RI+ H +ALKKYT+GKH+VAR E+L+ G
Sbjct: 923 RELILGRIKVHLNALKKYTYGKHIVARVEKLVAAG 957
>ref|NP_180482.1| pumilio-family RNA-binding protein, putative; protein id:
At2g29190.1, supported by cDNA: gi_20465636 [Arabidopsis
thaliana] gi|25354256|pir||E84693 hypothetical protein
At2g29190 [imported] - Arabidopsis thaliana
gi|3980413|gb|AAC95216.1| putative pumilio/Mpt5 family
RNA-binding protein [Arabidopsis thaliana]
Length = 972
Score = 47.8 bits (112), Expect = 1e-04
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = -3
Query: 664 RALLLFRIRAHTHALKKYTFGKHLVARFEQLLGEG 560
R L+L RI+ H +ALKKYT+GKH+VAR E+L+ G
Sbjct: 923 RELILGRIKVHLNALKKYTYGKHIVARVEKLVAAG 957
>dbj|BAB63677.1| P0518C01.14 [Oryza sativa (japonica cultivar-group)]
Length = 909
Score = 47.4 bits (111), Expect = 2e-04
Identities = 20/35 (57%), Positives = 28/35 (79%)
Frame = -3
Query: 664 RALLLFRIRAHTHALKKYTFGKHLVARFEQLLGEG 560
R ++L RI+AH + LKKYT+GKH+VAR E+L+ G
Sbjct: 863 REMILTRIKAHLNTLKKYTYGKHIVARVEKLVAAG 897
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,418,912
Number of Sequences: 1393205
Number of extensions: 11570091
Number of successful extensions: 25024
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 24382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25019
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
