Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001300A_C01 KMC001300A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84511 probable aspartate aminotransferase [imported] - Ara... 140 8e-33
ref|NP_565359.1| putative aspartate aminotransferase; protein id... 140 8e-33
pir||T04985 probable transaminase (EC 2.6.1.-) T16L1.170 [simila... 134 6e-31
ref|NP_567934.1| putative protein; protein id: At4g33680.1, supp... 134 6e-31
gb|AAN59772.1| Putative transaminase [Oryza sativa (japonica cul... 126 2e-28
>pir||A84511 probable aspartate aminotransferase [imported] - Arabidopsis
thaliana
Length = 429
Score = 140 bits (354), Expect = 8e-33
Identities = 65/97 (67%), Positives = 78/97 (80%)
Frame = -3
Query: 544 GKSQSVQSHVDNYMDNARILVDALTSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILEKT 365
G + ++S + Y +N +IL+D L S+GLKVYGG NAPY WVHF GS SWDVF EILE T
Sbjct: 313 GGLKEIRSVNNYYKENRKILMDTLVSLGLKVYGGVNAPYLWVHFKGSKSWDVFNEILENT 372
Query: 364 HMITVPGSGFGPGGEEYIRISAFGQRDSIIEASERFQ 254
H+ITVPGSGFGPGGEEY+RIS FG+RD I+EAS+R Q
Sbjct: 373 HIITVPGSGFGPGGEEYLRISGFGRRDHIVEASKRLQ 409
>ref|NP_565359.1| putative aspartate aminotransferase; protein id: At2g13810.1,
supported by cDNA: gi_15982837 [Arabidopsis thaliana]
gi|15982838|gb|AAL09766.1| At2g13810/F13J11.16
[Arabidopsis thaliana] gi|20197607|gb|AAD15433.2|
putative aspartate aminotransferase [Arabidopsis
thaliana] gi|20197797|gb|AAM15253.1| putative aspartate
aminotransferase [Arabidopsis thaliana]
gi|23505955|gb|AAN28837.1| At2g13810/F13J11.16
[Arabidopsis thaliana]
Length = 456
Score = 140 bits (354), Expect = 8e-33
Identities = 65/97 (67%), Positives = 78/97 (80%)
Frame = -3
Query: 544 GKSQSVQSHVDNYMDNARILVDALTSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILEKT 365
G + ++S + Y +N +IL+D L S+GLKVYGG NAPY WVHF GS SWDVF EILE T
Sbjct: 340 GGLKEIRSVNNYYKENRKILMDTLVSLGLKVYGGVNAPYLWVHFKGSKSWDVFNEILENT 399
Query: 364 HMITVPGSGFGPGGEEYIRISAFGQRDSIIEASERFQ 254
H+ITVPGSGFGPGGEEY+RIS FG+RD I+EAS+R Q
Sbjct: 400 HIITVPGSGFGPGGEEYLRISGFGRRDHIVEASKRLQ 436
>pir||T04985 probable transaminase (EC 2.6.1.-) T16L1.170 [similarity] -
Arabidopsis thaliana gi|3549670|emb|CAA20581.1| putative
protein [Arabidopsis thaliana]
gi|7270317|emb|CAB80085.1| putative protein [Arabidopsis
thaliana]
Length = 426
Score = 134 bits (338), Expect = 6e-31
Identities = 57/87 (65%), Positives = 71/87 (81%)
Frame = -3
Query: 508 YMDNARILVDALTSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILEKTHMITVPGSGFGP 329
Y +N I++D TS+G VYGGKNAPY WVHFP +SWDVFAEILEKTH++T PGSGFGP
Sbjct: 338 YKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGP 397
Query: 328 GGEEYIRISAFGQRDSIIEASERFQCL 248
GGE ++R+SAFG R++I+EA RF+ L
Sbjct: 398 GGEGFVRVSAFGHRENILEACRRFKQL 424
>ref|NP_567934.1| putative protein; protein id: At4g33680.1, supported by cDNA:
gi_15912290, supported by cDNA: gi_17529043 [Arabidopsis
thaliana] gi|15912291|gb|AAL08279.1| AT4g33680/T16L1_170
[Arabidopsis thaliana] gi|17529044|gb|AAL38732.1|
unknown protein [Arabidopsis thaliana]
gi|21436149|gb|AAM51321.1| unknown protein [Arabidopsis
thaliana]
Length = 461
Score = 134 bits (338), Expect = 6e-31
Identities = 57/87 (65%), Positives = 71/87 (81%)
Frame = -3
Query: 508 YMDNARILVDALTSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILEKTHMITVPGSGFGP 329
Y +N I++D TS+G VYGGKNAPY WVHFP +SWDVFAEILEKTH++T PGSGFGP
Sbjct: 373 YKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGP 432
Query: 328 GGEEYIRISAFGQRDSIIEASERFQCL 248
GGE ++R+SAFG R++I+EA RF+ L
Sbjct: 433 GGEGFVRVSAFGHRENILEACRRFKQL 459
>gb|AAN59772.1| Putative transaminase [Oryza sativa (japonica cultivar-group)]
Length = 458
Score = 126 bits (316), Expect = 2e-28
Identities = 55/85 (64%), Positives = 69/85 (80%)
Frame = -3
Query: 508 YMDNARILVDALTSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILEKTHMITVPGSGFGP 329
Y +NAR+LV+ S+G +V+GG +APY WV FPG SWDVFAEILEKTH+ITVPGSGFGP
Sbjct: 370 YRENARVLVETFRSLGKEVHGGGDAPYVWVRFPGRRSWDVFAEILEKTHVITVPGSGFGP 429
Query: 328 GGEEYIRISAFGQRDSIIEASERFQ 254
GGE +IR+SAF RD ++EA +R +
Sbjct: 430 GGEGFIRVSAFNSRDKVLEACQRLK 454
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,153,743
Number of Sequences: 1393205
Number of extensions: 11689492
Number of successful extensions: 46566
Number of sequences better than 10.0: 223
Number of HSP's better than 10.0 without gapping: 42724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46337
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
