Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001298A_C02 KMC001298A_c02
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32607.1| Unknown protein [Arabidopsis thaliana] gi|2319784... 43 0.004
ref|NP_197402.1| MAP kinase -like protein; protein id: At5g19010... 43 0.004
ref|NP_733161.1| CG31081-PA [Drosophila melanogaster] gi|2317237... 34 2.2
gb|AAA81668.1| ATPase subunit 6 32 6.5
gb|AAB41273.1| ATPase subunit 6 32 6.5
>gb|AAL32607.1| Unknown protein [Arabidopsis thaliana] gi|23197840|gb|AAN15447.1|
Unknown protein [Arabidopsis thaliana]
Length = 567
Score = 43.1 bits (100), Expect = 0.004
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = -3
Query: 669 ASSGSYPRRNPSYKNERPDDD---GIEGSNGLQPKPQYMARKVAAGQGGAGGQWY 514
A++ YP+R K+ R D+D EG + L+P QY+ +KV+A Q A +WY
Sbjct: 513 AAASQYPKRTQPCKSNRGDEDCATAAEGPSRLKPNTQYIPQKVSAAQDTAMSRWY 567
>ref|NP_197402.1| MAP kinase -like protein; protein id: At5g19010.1, supported by
cDNA: gi_17064905 [Arabidopsis thaliana]
Length = 567
Score = 43.1 bits (100), Expect = 0.004
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = -3
Query: 669 ASSGSYPRRNPSYKNERPDDD---GIEGSNGLQPKPQYMARKVAAGQGGAGGQWY 514
A++ YP+R K+ R D+D EG + L+P QY+ +KV+A Q A +WY
Sbjct: 513 AAASQYPKRTQPCKSNRGDEDCATAAEGPSRLKPNTQYIPQKVSAAQDTAMSRWY 567
>ref|NP_733161.1| CG31081-PA [Drosophila melanogaster] gi|23172374|gb|AAN14081.1|
CG31081-PA [Drosophila melanogaster]
Length = 315
Score = 33.9 bits (76), Expect = 2.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 672 AASSGSYPRRNPSYKNERPDDDGIEGSNGLQPKPQYMARKVAAG 541
A+S G YP + P Y+ + P ++ G G P PQ A + +G
Sbjct: 184 ASSLGYYPEQQPQYEQDAPSEEYPAGQVGYLPSPQQSAYQPQSG 227
>gb|AAA81668.1| ATPase subunit 6
Length = 233
Score = 32.3 bits (72), Expect = 6.5
Identities = 17/48 (35%), Positives = 27/48 (55%)
Frame = -1
Query: 164 IMYYCF*ILIFLGKILV*SVCYLFLYFLNFTVSLCHLLACFLYGLWLI 21
I+YYC + +L L+ C +FLY+++F C LL FL+ L+
Sbjct: 72 ILYYC---ITYLNLYLL--FCIVFLYYMSFLFLFCFLLDFFLFNNLLV 114
>gb|AAB41273.1| ATPase subunit 6
Length = 174
Score = 32.3 bits (72), Expect = 6.5
Identities = 17/48 (35%), Positives = 27/48 (55%)
Frame = -1
Query: 164 IMYYCF*ILIFLGKILV*SVCYLFLYFLNFTVSLCHLLACFLYGLWLI 21
I+YYC + +L L+ C +FLY+++F C LL FL+ L+
Sbjct: 69 ILYYC---ITYLNLYLL--FCIVFLYYMSFLFLFCFLLDFFLFNNLLV 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,729,312
Number of Sequences: 1393205
Number of extensions: 11361329
Number of successful extensions: 28893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28873
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
