Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001297A_C02 KMC001297A_c02
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD23951.1|AF093108_1 histone H3 [Tortula ruralis] 215 3e-55
pir||S04521 histone H3 (clone pH3c-1) - alfalfa (fragment) gi|82... 215 3e-55
ref|NP_195713.1| histone H3.3; protein id: At4g40030.1, supporte... 215 3e-55
gb|AAB36496.1| histone H3.2 precursor [Medicago sativa] 215 3e-55
gb|AAB36495.1| histone H3.2 215 3e-55
>gb|AAD23951.1|AF093108_1 histone H3 [Tortula ruralis]
Length = 117
Score = 215 bits (548), Expect = 3e-55
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = -3
Query: 591 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 412
KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct: 9 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 68
Query: 411 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 265
HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 69 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 117
>pir||S04521 histone H3 (clone pH3c-1) - alfalfa (fragment)
gi|829279|emb|CAA31967.1| histone H3 (AA 1-120)
[Medicago sativa]
Length = 119
Score = 215 bits (548), Expect = 3e-55
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = -3
Query: 591 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 412
KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct: 11 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 70
Query: 411 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 265
HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 71 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 119
>ref|NP_195713.1| histone H3.3; protein id: At4g40030.1, supported by cDNA:
gi_14326561 [Arabidopsis thaliana]
gi|15236105|ref|NP_195714.1| Histon H3; protein id:
At4g40040.1, supported by cDNA: 2670. [Arabidopsis
thaliana] gi|15238916|ref|NP_196659.1| histon H3
protein; protein id: At5g10980.1, supported by cDNA:
gi_17979504, supported by cDNA: gi_20453304 [Arabidopsis
thaliana] gi|417103|sp|P11105|H32_MEDSA Histone H3.2,
minor gi|27734400|sp|P59169|H33_ARATH Histone H3.3
gi|282871|pir||S24346 histon H3 protein [similarity] -
Arabidopsis thaliana gi|16324|emb|CAA42957.1| histone
H3.3 like protein [Arabidopsis thaliana]
gi|404825|emb|CAA42958.1| histone H3.3 like protein
[Arabidopsis thaliana] gi|488563|gb|AAB49538.1| histone
H3.2 gi|488567|gb|AAB36493.1| histone H3.2
gi|488569|gb|AAB36494.1| histone H3.2
gi|488575|gb|AAB36497.1| histone H3.2
gi|488577|gb|AAB36498.1| histone H3.2
gi|510911|emb|CAA56153.1| histone H3 [Lolium temulentum]
gi|1435157|emb|CAA58445.1| histone H3 variant H3.3
[Lycopersicon esculentum] gi|2558944|gb|AAB97162.1|
histone 3 [Gossypium hirsutum]
gi|3273350|dbj|BAA31218.1| histone H3 [Nicotiana
tabacum] gi|3885890|gb|AAC78105.1| histone H3 [Oryza
sativa] gi|4038469|gb|AAC97380.1| histone H3 [Porteresia
coarctata] gi|4490754|emb|CAB38916.1| histone H3.3
[Arabidopsis thaliana] gi|4490755|emb|CAB38917.1| Histon
H3 [Arabidopsis thaliana] gi|6006364|dbj|BAA84794.1| EST
D15300(C0425) corresponds to a region of the predicted
gene.~Similar to histone H3 (AB015760) [Oryza sativa
(japonica cultivar-group)] gi|7271058|emb|CAB80666.1|
histone H3.3 [Arabidopsis thaliana]
gi|7271059|emb|CAB80667.1| Histon H3 [Arabidopsis
thaliana] gi|8979732|emb|CAB96853.1| histon H3 protein
[Arabidopsis thaliana]
gi|14326562|gb|AAK60325.1|AF385735_1 AT4g40030/T5J17_200
[Arabidopsis thaliana] gi|17979505|gb|AAL50088.1|
AT5g10980/T30N20_250 [Arabidopsis thaliana]
gi|18700236|gb|AAL77728.1| AT4g40030/T5J17_200
[Arabidopsis thaliana] gi|20453305|gb|AAM19891.1|
AT5g10980/T30N20_250 [Arabidopsis thaliana]
gi|21554902|gb|AAM63725.1| histon H3 protein
[Arabidopsis thaliana] gi|27311571|gb|AAO00751.1| Histon
H3 [Arabidopsis thaliana] gi|28058719|gb|AAO29945.1|
Histone H3 [Arabidopsis thaliana]
Length = 136
Score = 215 bits (548), Expect = 3e-55
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = -3
Query: 591 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 412
KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct: 28 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87
Query: 411 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 265
HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 88 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>gb|AAB36496.1| histone H3.2 precursor [Medicago sativa]
Length = 124
Score = 215 bits (548), Expect = 3e-55
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = -3
Query: 591 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 412
KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct: 16 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 75
Query: 411 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 265
HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 76 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 124
>gb|AAB36495.1| histone H3.2
Length = 127
Score = 215 bits (548), Expect = 3e-55
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = -3
Query: 591 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 412
KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct: 19 KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 78
Query: 411 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 265
HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 79 HAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,849,508
Number of Sequences: 1393205
Number of extensions: 10241536
Number of successful extensions: 28909
Number of sequences better than 10.0: 498
Number of HSP's better than 10.0 without gapping: 27388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28796
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
