Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001295A_C01 KMC001295A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175777.1| leucine-rich repeat transmembrane protein kinas... 185 4e-46
dbj|BAB01040.1| serine/threonine protein kinase-like protein [Ar... 177 1e-43
ref|NP_188052.1| leucine-rich repeat transmembrane protein kinas... 177 1e-43
pir||T01267 leucine-rich repeat transmembrane protein kinase 1 -... 173 2e-42
pir||T01268 leucine-rich repeat transmembrane protein kinase 2 -... 172 4e-42
>ref|NP_175777.1| leucine-rich repeat transmembrane protein kinase 1, putative;
protein id: At1g53730.1 [Arabidopsis thaliana]
gi|25387064|pir||F96577 hypothetical protein F22G10.3
[imported] - Arabidopsis thaliana
gi|12324025|gb|AAG51974.1|AC024260_12 leucine-rich
repeat transmembrane protein kinase 1, putative;
10414-6710 [Arabidopsis thaliana]
Length = 719
Score = 185 bits (470), Expect = 4e-46
Identities = 96/114 (84%), Positives = 101/114 (88%), Gaps = 2/114 (1%)
Frame = -1
Query: 635 VVMLELISGRKPFDSSRSRFEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFAD 456
VVMLEL++GRKPFDS+RSR EQSLVRWATPQLHDIDALAKMVDPAL+GLYPVKSLSRFAD
Sbjct: 605 VVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFAD 664
Query: 455 VIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTQGGTP--RAGDVPDTQDF 300
VIALCVQPEPEFRPPMSEVVQALV LVQR NMSKRT G P RAG T D+
Sbjct: 665 VIALCVQPEPEFRPPMSEVVQALVVLVQRANMSKRTVGVDPSQRAGSADTTSDY 718
>dbj|BAB01040.1| serine/threonine protein kinase-like protein [Arabidopsis thaliana]
Length = 717
Score = 177 bits (449), Expect = 1e-43
Identities = 89/98 (90%), Positives = 93/98 (94%)
Frame = -1
Query: 635 VVMLELISGRKPFDSSRSRFEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFAD 456
VVMLEL++GRKPFDS+RSR EQSLVRWATPQLHDIDAL KMVDPAL+GLYPVKSLSRFAD
Sbjct: 608 VVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALGKMVDPALKGLYPVKSLSRFAD 667
Query: 455 VIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTQG 342
VIALCVQPEPEFRPPMSEVVQALV LVQR NMSKRT G
Sbjct: 668 VIALCVQPEPEFRPPMSEVVQALVVLVQRANMSKRTVG 705
>ref|NP_188052.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At3g14350.1 [Arabidopsis thaliana]
Length = 680
Score = 177 bits (449), Expect = 1e-43
Identities = 89/98 (90%), Positives = 93/98 (94%)
Frame = -1
Query: 635 VVMLELISGRKPFDSSRSRFEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFAD 456
VVMLEL++GRKPFDS+RSR EQSLVRWATPQLHDIDAL KMVDPAL+GLYPVKSLSRFAD
Sbjct: 571 VVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALGKMVDPALKGLYPVKSLSRFAD 630
Query: 455 VIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTQG 342
VIALCVQPEPEFRPPMSEVVQALV LVQR NMSKRT G
Sbjct: 631 VIALCVQPEPEFRPPMSEVVQALVVLVQRANMSKRTVG 668
>pir||T01267 leucine-rich repeat transmembrane protein kinase 1 - maize
(fragment) gi|3360289|gb|AAC27894.1| leucine-rich repeat
transmembrane protein kinase 1 [Zea mays]
Length = 684
Score = 173 bits (438), Expect = 2e-42
Identities = 91/113 (80%), Positives = 98/113 (86%), Gaps = 1/113 (0%)
Frame = -1
Query: 635 VVMLELISGRKPFDSSRSRFEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFAD 456
VVMLEL++GR+PFDSSR R EQSLVRWATPQLHDIDAL +MVDPAL+GLYP KSLSRFAD
Sbjct: 572 VVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFAD 631
Query: 455 VIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKR-TQGGTPRAGDVPDTQDF 300
V+ALCVQPEPEFRPPMSEVVQALVRLVQR NM+KR G T R D D QDF
Sbjct: 632 VLALCVQPEPEFRPPMSEVVQALVRLVQRANMTKRMLDGDTSRRPDDLD-QDF 683
>pir||T01268 leucine-rich repeat transmembrane protein kinase 2 - maize
gi|3360291|gb|AAC27895.1| leucine-rich repeat
transmembrane protein kinase 2 [Zea mays]
Length = 725
Score = 172 bits (435), Expect = 4e-42
Identities = 89/112 (79%), Positives = 96/112 (85%), Gaps = 1/112 (0%)
Frame = -1
Query: 635 VVMLELISGRKPFDSSRSRFEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFAD 456
VVMLEL++GR+PFDSSR R EQSLVRWA PQLHDIDAL +MVDPAL+GLYP KSLSRFAD
Sbjct: 612 VVMLELLTGRRPFDSSRPRSEQSLVRWAAPQLHDIDALDRMVDPALKGLYPAKSLSRFAD 671
Query: 455 VIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKR-TQGGTPRAGDVPDTQD 303
V+ALCVQPEPEFRPPMSEVVQALVRLVQR NM+KR GG G PD QD
Sbjct: 672 VLALCVQPEPEFRPPMSEVVQALVRLVQRANMTKRMLDGGDTSRG--PDDQD 721
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,289,441
Number of Sequences: 1393205
Number of extensions: 11231762
Number of successful extensions: 30476
Number of sequences better than 10.0: 871
Number of HSP's better than 10.0 without gapping: 28748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30228
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
