Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001294A_C01 KMC001294A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO72389.1| synaptobrevin-like protein [Oryza sativa (japonic... 161 5e-39
pir||D86180 hypothetical protein [imported] - Arabidopsis thalia... 159 4e-38
ref|NP_171967.1| synaptobrevin 7B, putative; protein id: At1g047... 159 4e-38
dbj|BAC42934.1| putative synaptobrevin [Arabidopsis thaliana] 157 8e-38
ref|NP_180826.1| putative synaptobrevin; protein id: At2g32670.1... 157 8e-38
>gb|AAO72389.1| synaptobrevin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 220
Score = 161 bits (408), Expect = 5e-39
Identities = 83/96 (86%), Positives = 87/96 (90%)
Frame = -2
Query: 607 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAPDFRTSGT 428
VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL QA DFR +GT
Sbjct: 122 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQAGT 181
Query: 427 SIRRKMWLPNMKIKLIVLGILIALILIIVLSATRGF 320
+RRKMWL NMKIKLIVLGI+IALILII+LS GF
Sbjct: 182 QVRRKMWLQNMKIKLIVLGIIIALILIIILSVCHGF 217
>pir||D86180 hypothetical protein [imported] - Arabidopsis thaliana
gi|2494115|gb|AAB80624.1| Strong similarity to
Arabidopsis ATHSAR1 (gb|M90418). ESTs
gb|T44122,gb|N65276,gb|AA041135 come from this gene.
[Arabidopsis thaliana]
Length = 175
Score = 159 bits (401), Expect = 4e-38
Identities = 82/96 (85%), Positives = 87/96 (90%)
Frame = -2
Query: 607 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAPDFRTSGT 428
+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL QA DFRT+GT
Sbjct: 78 MDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGT 137
Query: 427 SIRRKMWLPNMKIKLIVLGILIALILIIVLSATRGF 320
+RRKMWL NMKIKLIVL I+IALILIIVLS GF
Sbjct: 138 QMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGF 173
>ref|NP_171967.1| synaptobrevin 7B, putative; protein id: At1g04750.1 [Arabidopsis
thaliana] gi|27805768|sp|Q9ZTW3|V721_ARATH
Vesicle-associated membrane protein 721 (AtVAMP721)
(v-SNARE synaptobrevin 7B) (AtVAMP7B)
gi|4090884|gb|AAC98905.1| vesicle-associated membrane
protein 7B; synaptobrevin 7B [Arabidopsis thaliana]
gi|19310540|gb|AAL85003.1| At1g04740/T1G11_1
[Arabidopsis thaliana] gi|22137292|gb|AAM91491.1|
At1g04740/T1G11_1 [Arabidopsis thaliana]
Length = 219
Score = 159 bits (401), Expect = 4e-38
Identities = 82/96 (85%), Positives = 87/96 (90%)
Frame = -2
Query: 607 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAPDFRTSGT 428
+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL QA DFRT+GT
Sbjct: 122 MDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGT 181
Query: 427 SIRRKMWLPNMKIKLIVLGILIALILIIVLSATRGF 320
+RRKMWL NMKIKLIVL I+IALILIIVLS GF
Sbjct: 182 QMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGF 217
>dbj|BAC42934.1| putative synaptobrevin [Arabidopsis thaliana]
Length = 285
Score = 157 bits (398), Expect = 8e-38
Identities = 81/96 (84%), Positives = 85/96 (88%)
Frame = -2
Query: 607 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAPDFRTSGT 428
VDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL QA DFRT GT
Sbjct: 187 VDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGT 246
Query: 427 SIRRKMWLPNMKIKLIVLGILIALILIIVLSATRGF 320
IRRKMW NMKIKLIVLGI+I LILII+LS GF
Sbjct: 247 KIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGF 282
>ref|NP_180826.1| putative synaptobrevin; protein id: At2g32670.1 [Arabidopsis
thaliana] gi|27805753|sp|O48850|V725_ARATH
Vesicle-associated membrane protein 725 (AtVAMP725)
gi|7485009|pir||T00801 probable synaptobrevin [imported]
- Arabidopsis thaliana gi|2914706|gb|AAC04496.1|
putative synaptobrevin [Arabidopsis thaliana]
Length = 220
Score = 157 bits (398), Expect = 8e-38
Identities = 81/96 (84%), Positives = 85/96 (88%)
Frame = -2
Query: 607 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAPDFRTSGT 428
VDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL QA DFRT GT
Sbjct: 122 VDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGT 181
Query: 427 SIRRKMWLPNMKIKLIVLGILIALILIIVLSATRGF 320
IRRKMW NMKIKLIVLGI+I LILII+LS GF
Sbjct: 182 KIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGF 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,610,009
Number of Sequences: 1393205
Number of extensions: 11846356
Number of successful extensions: 31734
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 30106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31636
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
