Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001291A_C01 KMC001291A_c01
(703 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD22530.1| 1-deoxy-D-xylulose 5-phosphate synthase 1 [Medic... 254 6e-67
pir||T09543 deoxyxylulose synthase (EC 2.2.1.-) TKT2 precursor, ... 244 8e-64
gb|AAD38941.1|AF143812_1 1-D-deoxyxylulose 5-phosphate synthase ... 239 3e-62
gb|AAD56390.2|AF182286_1 1-deoxy-D-xylulose-5-phosphate synthase... 233 2e-60
gb|AAL16232.1|AF428463_1 AT4g15560/dl3821w [Arabidopsis thaliana] 221 6e-57
>emb|CAD22530.1| 1-deoxy-D-xylulose 5-phosphate synthase 1 [Medicago truncatula]
Length = 717
Score = 254 bits (650), Expect = 6e-67
Identities = 128/136 (94%), Positives = 131/136 (96%)
Frame = -3
Query: 701 EGERVALLGYGSAVQNCLAAASLVERHGLRITVADARFCKPLDRSLIRSLAKSHEVLITV 522
EGERVALLGYGSAVQNCLAAASLVE+HGLR+TVADARFCKPLDRSLIRSLAKSHEVLITV
Sbjct: 582 EGERVALLGYGSAVQNCLAAASLVEQHGLRLTVADARFCKPLDRSLIRSLAKSHEVLITV 641
Query: 521 EEGSIGGFGSHVAQFMALDGLLDGKLKWRPVVLPDRYIEHGSPNDQLSSAGLAPSHIAAT 342
EEGSIGGFGSHVAQFMALDGLLDG LKWRPVVLPDRYI+HGSP DQL AGL PSHIAAT
Sbjct: 642 EEGSIGGFGSHVAQFMALDGLLDGNLKWRPVVLPDRYIDHGSPADQLCMAGLTPSHIAAT 701
Query: 341 VFNILGQTREALEVMS 294
VFNILGQTREALEVMS
Sbjct: 702 VFNILGQTREALEVMS 717
>pir||T09543 deoxyxylulose synthase (EC 2.2.1.-) TKT2 precursor, chloroplast
[validated] - pepper gi|3559816|emb|CAA75778.1|
transketolase 2 [Capsicum annuum]
Length = 719
Score = 244 bits (623), Expect = 8e-64
Identities = 119/136 (87%), Positives = 130/136 (95%)
Frame = -3
Query: 701 EGERVALLGYGSAVQNCLAAASLVERHGLRITVADARFCKPLDRSLIRSLAKSHEVLITV 522
EGERVALLGYGSAVQNCLAAAS++E GL++TVADARFCKPLDR+LIRSLAKSHEVL+TV
Sbjct: 584 EGERVALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTV 643
Query: 521 EEGSIGGFGSHVAQFMALDGLLDGKLKWRPVVLPDRYIEHGSPNDQLSSAGLAPSHIAAT 342
E+GSIGGFGSHV QFMALDGLLDGKLKWRP+VLPDRYI+HGSP DQL+ AGL PSHIAAT
Sbjct: 644 EKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAAT 703
Query: 341 VFNILGQTREALEVMS 294
VFNILGQTREALEVM+
Sbjct: 704 VFNILGQTREALEVMT 719
>gb|AAD38941.1|AF143812_1 1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon esculentum]
Length = 719
Score = 239 bits (610), Expect = 3e-62
Identities = 118/136 (86%), Positives = 127/136 (92%)
Frame = -3
Query: 701 EGERVALLGYGSAVQNCLAAASLVERHGLRITVADARFCKPLDRSLIRSLAKSHEVLITV 522
EGERVALLGYGSAVQNCL AA ++E GL++TVADARFCKPLD +LIRSLAKSHEVLITV
Sbjct: 584 EGERVALLGYGSAVQNCLDAAIVLESRGLQVTVADARFCKPLDHALIRSLAKSHEVLITV 643
Query: 521 EEGSIGGFGSHVAQFMALDGLLDGKLKWRPVVLPDRYIEHGSPNDQLSSAGLAPSHIAAT 342
EEGSIGGFGSHV QFMALDGLLDGKLKWRP+VLPDRYI+HGSP DQL+ AGL PSHIAAT
Sbjct: 644 EEGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPVDQLAEAGLTPSHIAAT 703
Query: 341 VFNILGQTREALEVMS 294
VFNILGQTREALEVM+
Sbjct: 704 VFNILGQTREALEVMT 719
>gb|AAD56390.2|AF182286_1 1-deoxy-D-xylulose-5-phosphate synthase [Artemisia annua]
Length = 713
Score = 233 bits (594), Expect = 2e-60
Identities = 112/136 (82%), Positives = 127/136 (93%)
Frame = -3
Query: 701 EGERVALLGYGSAVQNCLAAASLVERHGLRITVADARFCKPLDRSLIRSLAKSHEVLITV 522
EG+RVALLGYG+AVQ+C+AAA++V+ GL ITVADARFCKPLD SLIR+LAK+HEVLITV
Sbjct: 578 EGQRVALLGYGTAVQSCMAAATIVQERGLNITVADARFCKPLDHSLIRALAKTHEVLITV 637
Query: 521 EEGSIGGFGSHVAQFMALDGLLDGKLKWRPVVLPDRYIEHGSPNDQLSSAGLAPSHIAAT 342
EEGSIGGFGSHVA F+ALDGLLDG LKWRP+VLPDRYI+HG+P DQL+ AGL PSHIAAT
Sbjct: 638 EEGSIGGFGSHVAHFLALDGLLDGNLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAAT 697
Query: 341 VFNILGQTREALEVMS 294
VFN+LGQTREALEVMS
Sbjct: 698 VFNVLGQTREALEVMS 713
>gb|AAL16232.1|AF428463_1 AT4g15560/dl3821w [Arabidopsis thaliana]
Length = 428
Score = 221 bits (564), Expect = 6e-57
Identities = 107/132 (81%), Positives = 119/132 (90%)
Frame = -3
Query: 701 EGERVALLGYGSAVQNCLAAASLVERHGLRITVADARFCKPLDRSLIRSLAKSHEVLITV 522
EGERVALLGYGSAVQ+CL AA ++E GL +TVADARFCKPLDR+LIRSLAKSHEVLITV
Sbjct: 296 EGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITV 355
Query: 521 EEGSIGGFGSHVAQFMALDGLLDGKLKWRPVVLPDRYIEHGSPNDQLSSAGLAPSHIAAT 342
EEGSIGGFGSHV QF+ALDGLLDGKLKWRP+VLPDRYI+HG+P DQL+ AGL PSHIAAT
Sbjct: 356 EEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAAT 415
Query: 341 VFNILGQTREAL 306
N++G REAL
Sbjct: 416 ALNLIGAPREAL 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,510,087
Number of Sequences: 1393205
Number of extensions: 13625599
Number of successful extensions: 28830
Number of sequences better than 10.0: 324
Number of HSP's better than 10.0 without gapping: 27893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28711
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
