Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001289A_C01 KMC001289A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM09517.1|AF489877_1 putative glucosyltransferase [Phaseolus... 33 1.9
ref|NP_071554.1| G-protein coupled chemoattractant-like receptor... 32 5.4
dbj|BAA92916.1| unnamed protein product [Oryza sativa (japonica ... 31 9.3
dbj|BAB85920.1| auxin response factor 16 [Oryza sativa] 31 9.3
>gb|AAM09517.1|AF489877_1 putative glucosyltransferase [Phaseolus lunatus]
Length = 462
Score = 33.5 bits (75), Expect = 1.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 156 PLQLHCSSNKHMTNYASSSNIVLGIISTISQYKALG*SHHKSII 287
P Q H + H+++ SS NI + +ST++ + HHKSII
Sbjct: 22 PAQGHLNQLMHLSHLISSHNIPVHYVSTVTHIRQATLRHHKSII 65
>ref|NP_071554.1| G-protein coupled chemoattractant-like receptor [Rattus norvegicus]
gi|3023640|sp|O35786|CML1_RAT CHEMOKINE RECEPTOR-LIKE 1
(G-PROTEIN COUPLED RECEPTOR DEZ) (G-PROTEIN COUPLED
CHEMOATTRACTANT-LIKE RECEPTOR) gi|7441608|pir||JC5796
probable chemoattractant receptor - rat
gi|2624398|emb|CAA05715.1| G-protein coupled
chemoattractant-like receptor [Rattus norvegicus]
Length = 371
Score = 32.0 bits (71), Expect = 5.4
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +2
Query: 284 NTLWMFKVHACSHHIEIFLKLWINISKACYHWAFLNLRTEKLSGNVRSFFKIHLMPSSVL 463
NT+W + IFL + I + YHW F K + SF H M +SV
Sbjct: 72 NTVWFVNLAVADFLFNIFLPIHITYAAMDYHWVF-----GKAMCKISSFLLSHNMYTSVF 126
Query: 464 L 466
L
Sbjct: 127 L 127
>dbj|BAA92916.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 613
Score = 31.2 bits (69), Expect = 9.3
Identities = 30/115 (26%), Positives = 46/115 (39%), Gaps = 15/115 (13%)
Frame = +2
Query: 263 LITSQVHNTLWMFKV----HACSHHIEIFLKLWINISKACYHWAFLNLRTEKLSGNV--- 421
LIT +H + W FK H + ++ K AF+ LR+E V
Sbjct: 162 LITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVR 221
Query: 422 RSFFKIHLMPSSVLLSYALHLG--------NKKKQLFMTRFE*KFXQKQLSLEFN 562
R K MP+SV+ S ++HLG K +F+ + + Q Q + N
Sbjct: 222 RLVQKQSTMPASVISSQSMHLGVLASASHAIKTNSIFLVYYRPRLSQSQYIVSVN 276
>dbj|BAB85920.1| auxin response factor 16 [Oryza sativa]
Length = 695
Score = 31.2 bits (69), Expect = 9.3
Identities = 30/115 (26%), Positives = 46/115 (39%), Gaps = 15/115 (13%)
Frame = +2
Query: 263 LITSQVHNTLWMFKV----HACSHHIEIFLKLWINISKACYHWAFLNLRTEKLSGNV--- 421
LIT +H + W FK H + ++ K AF+ LR+E V
Sbjct: 158 LITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVR 217
Query: 422 RSFFKIHLMPSSVLLSYALHLG--------NKKKQLFMTRFE*KFXQKQLSLEFN 562
R K MP+SV+ S ++HLG K +F+ + + Q Q + N
Sbjct: 218 RLVQKQSTMPASVISSQSMHLGVLASASHAIKTNSIFLVYYRPRLSQSQYIVSVN 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,161,780
Number of Sequences: 1393205
Number of extensions: 9096495
Number of successful extensions: 18928
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18921
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
