Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001288A_C01 KMC001288A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO59432.1| glycosyltransferase [Aeromonas hydrophila] 33 2.1
sp|Q89330|POLG_ZYMVR Genome polyprotein [Contains: N-terminal pr... 32 3.6
>gb|AAO59432.1| glycosyltransferase [Aeromonas hydrophila]
Length = 743
Score = 33.1 bits (74), Expect = 2.1
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 245 VYVVSKLYVEECIDSMLSKSLSGAPC 322
VY V K Y+EECIDS+L++S+ G C
Sbjct: 10 VYNVEK-YIEECIDSILTQSIDGIKC 34
>sp|Q89330|POLG_ZYMVR Genome polyprotein [Contains: N-terminal protein (P1); Helper
component proteinase (HC-Pro); Protein P3; 6 kDa protein
1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa
protein 2 (6K2); Genome-linked protein (VPG); Nuclear
inclusion protein A (NI-A) (NIA) (49 kDa proteinase) (49
kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB)
(RNA-directed RNA polymerase) ; Coat protein (CP)]
gi|461421|gb|AAA65558.1| polyprotein
Length = 3083
Score = 32.3 bits (72), Expect = 3.6
Identities = 17/52 (32%), Positives = 26/52 (49%)
Frame = -1
Query: 423 RSCSGGNQTRSCSLASADSHNNLKGPRVSGDLWLHGAPERDLDSILSMHSST 268
R+C G + SL S S +++ PR +G W+H + D L M S+T
Sbjct: 2152 RACLVGTNFQEKSLRSTVSESSMTNPRRTGSYWIHWISTNEGDCGLPMVSTT 2203
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,922,401
Number of Sequences: 1393205
Number of extensions: 9913270
Number of successful extensions: 23348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23345
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
