Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001287A_C03 KMC001287A_c03
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P35055|HEM6_SOYBN Coproporphyrinogen III oxidase, chloroplast... 179 3e-51
pir||S39523 coproporphyrinogen oxidase (EC 1.3.3.3) precursor - ... 179 3e-51
sp|Q42946|HEM6_TOBAC Coproporphyrinogen III oxidase, chloroplast... 175 8e-50
sp|Q42840|HEM6_HORVU Coproporphyrinogen III oxidase, chloroplast... 171 2e-48
sp|Q9LR75|HEM6_ARATH Coproporphyrinogen III oxidase, chloroplast... 169 8e-48
>sp|P35055|HEM6_SOYBN Coproporphyrinogen III oxidase, chloroplast precursor
(Coproporphyrinogenase) (Coprogen oxidase)
gi|414666|emb|CAA50400.1| coproporphyrinogen oxidase
[Glycine max] gi|414667|emb|CAA50401.1|
coproporphyrinogen oxidase [Glycine max]
Length = 385
Score = 179 bits (454), Expect(2) = 3e-51
Identities = 84/99 (84%), Positives = 90/99 (90%)
Frame = -3
Query: 648 DYDQEMLLSFATECANSVVPSYIPIIEKRKDTPFPDHQ*AWQQLRRGRYVEFNLVYDRGT 469
DYDQEMLLSFATECANSV+P+Y+PIIEKRKD PF DHQ AWQQLRRGRYVEFNLVYDRGT
Sbjct: 277 DYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLVYDRGT 336
Query: 468 TFGLKTGGRIESILVSLPLTSRWEYDHKPEDRERRMETL 352
TFGLKTGGRIESILVSLPLT+RWEYDHKPE+ + L
Sbjct: 337 TFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLL 375
Score = 45.1 bits (105), Expect(2) = 3e-51
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -1
Query: 374 GSEEWKLLDACINPKEWI 321
GSEEWKLLDACINPKEWI
Sbjct: 368 GSEEWKLLDACINPKEWI 385
>pir||S39523 coproporphyrinogen oxidase (EC 1.3.3.3) precursor - soybean
Length = 385
Score = 179 bits (454), Expect(2) = 3e-51
Identities = 84/99 (84%), Positives = 90/99 (90%)
Frame = -3
Query: 648 DYDQEMLLSFATECANSVVPSYIPIIEKRKDTPFPDHQ*AWQQLRRGRYVEFNLVYDRGT 469
DYDQEMLLSFATECANSV+P+Y+PIIEKRKD PF DHQ AWQQLRRGRYVEFNLVYDRGT
Sbjct: 277 DYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLVYDRGT 336
Query: 468 TFGLKTGGRIESILVSLPLTSRWEYDHKPEDRERRMETL 352
TFGLKTGGRIESILVSLPLT+RWEYDHKPE+ + L
Sbjct: 337 TFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLL 375
Score = 45.1 bits (105), Expect(2) = 3e-51
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -1
Query: 374 GSEEWKLLDACINPKEWI 321
GSEEWKLLDACINPKEWI
Sbjct: 368 GSEEWKLLDACINPKEWI 385
>sp|Q42946|HEM6_TOBAC Coproporphyrinogen III oxidase, chloroplast precursor
(Coproporphyrinogenase) (Coprogen oxidase)
gi|7431647|pir||T02929 coproporphyrinogen oxidase (EC
1.3.3.3) precursor, chloroplast - common tobacco
gi|1213067|emb|CAA58038.1| coproporphyrinogen oxidase
[Nicotiana tabacum]
Length = 397
Score = 175 bits (444), Expect(2) = 8e-50
Identities = 81/91 (89%), Positives = 87/91 (95%)
Frame = -3
Query: 648 DYDQEMLLSFATECANSVVPSYIPIIEKRKDTPFPDHQ*AWQQLRRGRYVEFNLVYDRGT 469
DYDQEMLLSF+TECANSV+P+YIPI+EKRKDTPF D AWQQLRRGRYVEFNLVYDRGT
Sbjct: 289 DYDQEMLLSFSTECANSVIPAYIPIVEKRKDTPFTDKHKAWQQLRRGRYVEFNLVYDRGT 348
Query: 468 TFGLKTGGRIESILVSLPLTSRWEYDHKPED 376
TFGLKTGGRIESILVSLPLT+RWEYDHKPE+
Sbjct: 349 TFGLKTGGRIESILVSLPLTARWEYDHKPEE 379
Score = 43.9 bits (102), Expect(2) = 8e-50
Identities = 17/18 (94%), Positives = 18/18 (99%)
Frame = -1
Query: 374 GSEEWKLLDACINPKEWI 321
G+EEWKLLDACINPKEWI
Sbjct: 380 GTEEWKLLDACINPKEWI 397
>sp|Q42840|HEM6_HORVU Coproporphyrinogen III oxidase, chloroplast precursor
(Coproporphyrinogenase) (Coprogen oxidase)
gi|7431649|pir||T04486 probable coproporphyrinogen
oxidase (EC 1.3.3.3) precursor - barley
gi|1212994|emb|CAA58037.1| coproporphyrinogen oxidase
[Hordeum vulgare subsp. vulgare]
Length = 391
Score = 171 bits (432), Expect(2) = 2e-48
Identities = 79/99 (79%), Positives = 89/99 (89%)
Frame = -3
Query: 648 DYDQEMLLSFATECANSVVPSYIPIIEKRKDTPFPDHQ*AWQQLRRGRYVEFNLVYDRGT 469
DYDQ+MLL+FATECA SV+P+YIPIIE+RKDTPF + Q AWQQ+RRGRYVEFNLVYDRGT
Sbjct: 283 DYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVRRGRYVEFNLVYDRGT 342
Query: 468 TFGLKTGGRIESILVSLPLTSRWEYDHKPEDRERRMETL 352
TFGLKTGGRIESILVSLPLT+RWEYDHKPE+ + L
Sbjct: 343 TFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLL 381
Score = 44.3 bits (103), Expect(2) = 2e-48
Identities = 17/18 (94%), Positives = 18/18 (99%)
Frame = -1
Query: 374 GSEEWKLLDACINPKEWI 321
GSEEWKLLDACINPKEW+
Sbjct: 374 GSEEWKLLDACINPKEWL 391
>sp|Q9LR75|HEM6_ARATH Coproporphyrinogen III oxidase, chloroplast precursor
(Coproporphyrinogenase) (Coprogen oxidase)
gi|25284538|pir||C86166 protein F21B7.10 [imported] -
Arabidopsis thaliana
gi|9280667|gb|AAF86536.1|AC002560_29 F21B7.10
[Arabidopsis thaliana] gi|14624992|dbj|BAB61876.1|
coproporphyrinogen III oxidase [Arabidopsis thaliana]
gi|17221413|emb|CAD12661.1| coproporphyrinogen III
oxidase [Arabidopsis thaliana]
Length = 386
Score = 169 bits (427), Expect(2) = 8e-48
Identities = 79/91 (86%), Positives = 85/91 (92%)
Frame = -3
Query: 648 DYDQEMLLSFATECANSVVPSYIPIIEKRKDTPFPDHQ*AWQQLRRGRYVEFNLVYDRGT 469
DYDQEMLLSFATECANSVVP+YIPI+EKRKD F + AWQQLRRGRYVEFNLVYDRGT
Sbjct: 278 DYDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGRYVEFNLVYDRGT 337
Query: 468 TFGLKTGGRIESILVSLPLTSRWEYDHKPED 376
TFGLKTGGRIESILVSLPL++RWEYDHKPE+
Sbjct: 338 TFGLKTGGRIESILVSLPLSARWEYDHKPEE 368
Score = 43.9 bits (102), Expect(2) = 8e-48
Identities = 17/18 (94%), Positives = 18/18 (99%)
Frame = -1
Query: 374 GSEEWKLLDACINPKEWI 321
G+EEWKLLDACINPKEWI
Sbjct: 369 GTEEWKLLDACINPKEWI 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,542,625
Number of Sequences: 1393205
Number of extensions: 11797126
Number of successful extensions: 29680
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 28571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29654
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
