Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001285A_C01 KMC001285A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL75899.1| At2g43020/MFL8.12 [Arabidopsis thaliana] 155 5e-37
ref|NP_181830.1| putative amine oxidase; protein id: At2g43020.1... 155 5e-37
ref|NP_191464.1| putative protein; protein id: At3g59050.1, supp... 140 2e-32
gb|AAM62855.1| putative amine oxidase [Arabidopsis thaliana] 139 4e-32
pir||D96682 protein F1E22.18 [imported] - Arabidopsis thaliana g... 85 8e-16
>gb|AAL75899.1| At2g43020/MFL8.12 [Arabidopsis thaliana]
Length = 490
Score = 155 bits (392), Expect = 5e-37
Identities = 73/88 (82%), Positives = 79/88 (88%)
Frame = -2
Query: 673 LGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGMMAAEDCRMRVL 494
+GSYSYD VGKPH+LYERLRVPVDNLFFAGEATS S+PGSVHGAYSTG+MAAEDCRMRVL
Sbjct: 403 MGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVL 462
Query: 493 ERYGELDLLHPAMGEEATLSIPLQISRM 410
ERYGELDL P MGEE S+PL ISR+
Sbjct: 463 ERYGELDLFQPVMGEEGPASVPLLISRL 490
>ref|NP_181830.1| putative amine oxidase; protein id: At2g43020.1, supported by cDNA:
gi_18650597 [Arabidopsis thaliana]
gi|25408829|pir||A84861 probable amine oxidase
[imported] - Arabidopsis thaliana
gi|4531444|gb|AAD22129.1| putative amine oxidase
[Arabidopsis thaliana]
Length = 490
Score = 155 bits (392), Expect = 5e-37
Identities = 73/88 (82%), Positives = 79/88 (88%)
Frame = -2
Query: 673 LGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGMMAAEDCRMRVL 494
+GSYSYD VGKPH+LYERLRVPVDNLFFAGEATS S+PGSVHGAYSTG+MAAEDCRMRVL
Sbjct: 403 MGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVL 462
Query: 493 ERYGELDLLHPAMGEEATLSIPLQISRM 410
ERYGELDL P MGEE S+PL ISR+
Sbjct: 463 ERYGELDLFQPVMGEEGPASVPLLISRL 490
>ref|NP_191464.1| putative protein; protein id: At3g59050.1, supported by cDNA:
16421., supported by cDNA: gi_18086417 [Arabidopsis
thaliana] gi|11357513|pir||T47787 hypothetical protein
F17J16.100 - Arabidopsis thaliana
gi|7529748|emb|CAB86933.1| putative protein [Arabidopsis
thaliana] gi|18086418|gb|AAL57665.1|
AT3g59050/F17J16_100 [Arabidopsis thaliana]
gi|23505969|gb|AAN28844.1| At3g59050/F17J16_100
[Arabidopsis thaliana]
Length = 488
Score = 140 bits (352), Expect = 2e-32
Identities = 70/88 (79%), Positives = 76/88 (85%)
Frame = -2
Query: 673 LGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGMMAAEDCRMRVL 494
LGSYSYD V KPH+LYERLRVP+DNLFFAGEATS SYPGSVHGAYSTG++AAEDCRMRVL
Sbjct: 404 LGSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVL 463
Query: 493 ERYGELDLLHPAMGEEATLSIPLQISRM 410
ERYGEL+ M EEA S+PL ISRM
Sbjct: 464 ERYGELE---HEMEEEAPASVPLLISRM 488
>gb|AAM62855.1| putative amine oxidase [Arabidopsis thaliana]
Length = 488
Score = 139 bits (350), Expect = 4e-32
Identities = 69/88 (78%), Positives = 76/88 (85%)
Frame = -2
Query: 673 LGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGMMAAEDCRMRVL 494
+GSYSYD V KPH+LYERLRVP+DNLFFAGEATS SYPGSVHGAYSTG++AAEDCRMRVL
Sbjct: 404 MGSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVL 463
Query: 493 ERYGELDLLHPAMGEEATLSIPLQISRM 410
ERYGEL+ M EEA S+PL ISRM
Sbjct: 464 ERYGELE---HEMEEEAPASVPLLISRM 488
>pir||D96682 protein F1E22.18 [imported] - Arabidopsis thaliana
gi|6686400|gb|AAF23834.1|AC007234_6 F1E22.18
[Arabidopsis thaliana]
Length = 516
Score = 85.1 bits (209), Expect = 8e-16
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 5/93 (5%)
Frame = -2
Query: 673 LGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGMMAAEDCRMRVL 494
LG Y+YD VG P +LY RL PVDN+FF GEA ++ + GS HGA+ G+ A+++C+ +
Sbjct: 424 LGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFLAGVSASQNCQRYIF 483
Query: 493 ERYGELDLLH--PAMGEE---ATLSIPLQISRM 410
ER G + L MG T ++PLQISRM
Sbjct: 484 ERLGAWEKLKLVSLMGNSDILETATVPLQISRM 516
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,785,763
Number of Sequences: 1393205
Number of extensions: 12569135
Number of successful extensions: 33496
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 32068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33456
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
