Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001279A_C01 KMC001279A_c01
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T48868 zinc finger protein [imported] - garden pea gi|56163... 152 2e-41
ref|NP_680170.1| zinc finger protein 3 (gb|AAD27875.1); protein ... 121 1e-26
gb|AAM61197.1| zinc finger protein 3 [Arabidopsis thaliana] 121 1e-26
ref|NP_566183.1| zinc finger protein 1 (zfn1); protein id: At3g0... 117 1e-25
pir||T48874 zinc finger protein 1 [imported] - Arabidopsis thali... 117 1e-25
>pir||T48868 zinc finger protein [imported] - garden pea
gi|5616313|gb|AAD45720.1| zinc finger protein [Pisum
sativum]
Length = 417
Score = 152 bits (383), Expect(2) = 2e-41
Identities = 68/78 (87%), Positives = 71/78 (90%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNI 484
CRFHHPRER IPAPDC+LSP+GLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIF YN+
Sbjct: 299 CRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNV 358
Query: 483 SAPPSADASGRRLLGSSS 430
A P AD GRRLLGSSS
Sbjct: 359 -ASPLADTPGRRLLGSSS 375
Score = 62.4 bits (150), Expect = 5e-09
Identities = 28/52 (53%), Positives = 34/52 (64%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
CRFHHP+++A A L+ LG PLRP E +Y R G CKFG +CKF HP
Sbjct: 96 CRFHHPKDKAGVAGRVALNILGYPLRPNESERAYYLRTGQCKFGNTCKFHHP 147
Score = 50.1 bits (118), Expect = 3e-05
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP------MG 502
CRF+HP R + + P R G+P C +Y + G CKFG +C+F HP G
Sbjct: 51 CRFNHPPNRKLAIATARMKG-EFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAG 109
Query: 501 IFAYNISAPPSADASGRRL----LGSSSSGNRC 415
A NI P R G GN C
Sbjct: 110 RVALNILGYPLRPNESERAYYLRTGQCKFGNTC 142
Score = 45.8 bits (107), Expect = 5e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P PGEP C +Y R G+C+FG +C+F+HP
Sbjct: 28 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 56
Score = 39.7 bits (91), Expect(2) = 2e-41
Identities = 21/36 (58%), Positives = 26/36 (71%), Gaps = 8/36 (22%)
Frame = -3
Query: 425 GTAALNLSSE--------EPRRVSISETRHVPSGDD 342
GTAAL+LSSE +PRR+S+SETR +P GDD
Sbjct: 376 GTAALSLSSEGLVESGTAKPRRLSLSETRPIPPGDD 411
>ref|NP_680170.1| zinc finger protein 3 (gb|AAD27875.1); protein id: At5g16540.1,
supported by cDNA: 113763. [Arabidopsis thaliana]
Length = 375
Score = 121 bits (303), Expect = 1e-26
Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAY-N 487
C+FHHPR+R P PDC+LS +GLPLRPGEPLCVFYSRYGICKFGPSCKFDHPM +F Y N
Sbjct: 264 CKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNN 323
Query: 486 ISAPPSADAS 457
+A PS +S
Sbjct: 324 NTASPSPSSS 333
Score = 59.3 bits (142), Expect = 4e-08
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
C+FHHPR +A ++ L PLRP E C ++ R G CKFG +CKF+HP
Sbjct: 108 CKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNHP 159
Score = 51.2 bits (121), Expect = 1e-05
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
CRF+HP +R + + P R G+P C FY + G CKFG +CKF HP
Sbjct: 63 CRFNHPHDRKLVIATARIKG-EYPERIGQPECEFYLKTGTCKFGVTCKFHHP 113
Score = 45.8 bits (107), Expect = 5e-04
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P RPG+P C FY + G CKFG CKF HP
Sbjct: 241 PERPGQPECQFYMKTGDCKFGTVCKFHHP 269
Score = 45.1 bits (105), Expect = 9e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P R GEP C +Y R G+C+FG +C+F+HP
Sbjct: 40 PERHGEPDCAYYIRTGLCRFGSTCRFNHP 68
>gb|AAM61197.1| zinc finger protein 3 [Arabidopsis thaliana]
Length = 354
Score = 121 bits (303), Expect = 1e-26
Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAY-N 487
C+FHHPR+R P PDC+LS +GLPLRPGEPLCVFYSRYGICKFGPSCKFDHPM +F Y N
Sbjct: 243 CKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNN 302
Query: 486 ISAPPSADAS 457
+A PS +S
Sbjct: 303 NTASPSPSSS 312
Score = 59.3 bits (142), Expect = 4e-08
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
C+FHHPR +A ++ L PLRP E C ++ R G CKFG +CKF+HP
Sbjct: 87 CKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNHP 138
Score = 51.2 bits (121), Expect = 1e-05
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
CRF+HP +R + + P R G+P C FY + G CKFG +CKF HP
Sbjct: 42 CRFNHPHDRKLVIATARIKG-EYPERIGQPECEFYLKTGTCKFGVTCKFHHP 92
Score = 45.8 bits (107), Expect = 5e-04
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P RPG+P C FY + G CKFG CKF HP
Sbjct: 220 PERPGQPECQFYMKTGDCKFGTVCKFHHP 248
Score = 45.1 bits (105), Expect = 9e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P R GEP C +Y R G+C+FG +C+F+HP
Sbjct: 19 PERHGEPDCAYYIRTGLCRFGSTCRFNHP 47
>ref|NP_566183.1| zinc finger protein 1 (zfn1); protein id: At3g02830.1, supported by
cDNA: gi_4928916 [Arabidopsis thaliana]
gi|26451016|dbj|BAC42614.1| putative zinc finger protein
1 zfn1 [Arabidopsis thaliana]
Length = 397
Score = 117 bits (293), Expect = 1e-25
Identities = 47/62 (75%), Positives = 55/62 (87%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNI 484
C+FHHPR+R P PDC+LS +GLPLRPGEPLCVFY+RYGICKFGPSCKFDHPM +F Y+
Sbjct: 295 CKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDN 354
Query: 483 SA 478
+A
Sbjct: 355 TA 356
Score = 61.2 bits (147), Expect = 1e-08
Identities = 27/52 (51%), Positives = 34/52 (64%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
C+FHHPR +A A L+ LG PLR E C ++ R G CKFG +CKF+HP
Sbjct: 106 CKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHP 157
Score = 51.6 bits (122), Expect = 9e-06
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
CRF+HPR+R + + P R G+P C +Y + G CKFG +CKF HP
Sbjct: 61 CRFNHPRDRELVIATARMRG-EYPERIGQPECEYYLKTGTCKFGVTCKFHHP 111
Score = 47.8 bits (112), Expect = 1e-04
Identities = 17/29 (58%), Positives = 23/29 (78%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P RPGEP C +Y R G+C+FG +C+F+HP
Sbjct: 38 PERPGEPDCSYYIRTGLCRFGSTCRFNHP 66
Score = 45.8 bits (107), Expect = 5e-04
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P RPG+P C FY + G CKFG CKF HP
Sbjct: 272 PERPGQPECQFYMKTGDCKFGTVCKFHHP 300
>pir||T48874 zinc finger protein 1 [imported] - Arabidopsis thaliana
gi|4928917|gb|AAD33769.1|AF138743_1 zinc finger protein
1 [Arabidopsis thaliana]
Length = 424
Score = 117 bits (293), Expect = 1e-25
Identities = 47/62 (75%), Positives = 55/62 (87%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNI 484
C+FHHPR+R P PDC+LS +GLPLRPGEPLCVFY+RYGICKFGPSCKFDHPM +F Y+
Sbjct: 295 CKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDN 354
Query: 483 SA 478
+A
Sbjct: 355 TA 356
Score = 61.2 bits (147), Expect = 1e-08
Identities = 27/52 (51%), Positives = 34/52 (64%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
C+FHHPR +A A L+ LG PLR E C ++ R G CKFG +CKF+HP
Sbjct: 106 CKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHP 157
Score = 48.1 bits (113), Expect = 1e-04
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = -2
Query: 663 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
CR +HPR+R + + P R G P C +Y + G CKFG +CKF HP
Sbjct: 61 CRVNHPRDRELVIATARMRG-EYPERIGHPECEYYLKTGTCKFGVTCKFHHP 111
Score = 45.8 bits (107), Expect = 5e-04
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P RPG+P C FY + G CKFG CKF HP
Sbjct: 272 PERPGQPECQFYMKTGDCKFGTVCKFHHP 300
Score = 45.1 bits (105), Expect = 9e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -2
Query: 594 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 508
P RPGEP C +Y R G+C+FG +C+ +HP
Sbjct: 38 PERPGEPDCSYYIRTGLCRFGSTCRVNHP 66
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 619,000,735
Number of Sequences: 1393205
Number of extensions: 14478738
Number of successful extensions: 48919
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 46807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48860
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
