Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001276A_C01 KMC001276A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00059845.1| hypothetical protein [Clostridium thermocellu... 32 7.0
dbj|BAB25636.1| unnamed protein product [Mus musculus] 32 7.0
ref|NP_010592.1| Hypothetical ORF; Ydr306cp [Saccharomyces cerev... 32 7.0
gb|EAA30019.1| predicted protein [Neurospora crassa] 32 7.0
ref|NP_615455.1| bacterial extracellular solute-binding family 3... 31 9.1
>ref|ZP_00059845.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
Length = 413
Score = 31.6 bits (70), Expect = 7.0
Identities = 27/73 (36%), Positives = 34/73 (45%), Gaps = 6/73 (8%)
Frame = -1
Query: 513 EVKDSGKRVGTVSPETSLGDDVKLHRYGSGTSRIKLLGVRKRRLSVLIRKR------RGV 352
E++D GK TV LG L YG G + LGVRK RL K+ G+
Sbjct: 309 ELQDQGK--DTVEANVLLGFPPDLREYGIGAQILYDLGVRKIRLLTNNPKKLIGLGGHGL 366
Query: 351 KIVDIDSPEIVGN 313
+IV+ EI GN
Sbjct: 367 EIVERVPIEIKGN 379
>dbj|BAB25636.1| unnamed protein product [Mus musculus]
Length = 131
Score = 31.6 bits (70), Expect = 7.0
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 552 RVNQPKQDLHNRSEVKDSGKRVGTVSPETSLGDD 451
R QP+Q L R + DS V VS TSLG+D
Sbjct: 9 RRQQPQQGLRRRRQTSDSSVGVNHVSSTTSLGED 42
>ref|NP_010592.1| Hypothetical ORF; Ydr306cp [Saccharomyces cerevisiae]
gi|2131422|pir||S61192 hypothetical protein YDR306c -
yeast (Saccharomyces cerevisiae)
gi|849223|gb|AAB64742.1| Ydr306cp [Saccharomyces
cerevisiae]
Length = 478
Score = 31.6 bits (70), Expect = 7.0
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 249 EHFKAVQNFMR-THLP*PPTAFNFQQFQDCQCPQS 350
E F A++NF + THL P ++ + Q FQD Q PQ+
Sbjct: 266 ELFSAIKNFTKLTHLSFPRSSIDCQGFQDIQWPQN 300
>gb|EAA30019.1| predicted protein [Neurospora crassa]
Length = 1220
Score = 31.6 bits (70), Expect = 7.0
Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 12/63 (19%)
Frame = -3
Query: 382 ECIDKKAPRCEDCGH*QS*NCWKLNAVGGQ------------GRCVRIKFCTALKCSRYD 239
E + KK RC CG + + A GG+ RC+++K+C+A +C R D
Sbjct: 1146 EALRKKEERCRSCGKGEEELVEERKANGGETAGKTAEVLRKCARCLKVKYCSA-ECQRRD 1204
Query: 238 LHT 230
T
Sbjct: 1205 WKT 1207
>ref|NP_615455.1| bacterial extracellular solute-binding family 3 protein
[Methanosarcina acetivorans str. C2A]
gi|19914275|gb|AAM03935.1| bacterial extracellular
solute-binding family 3 protein [Methanosarcina
acetivorans str. C2A]
Length = 738
Score = 31.2 bits (69), Expect = 9.1
Identities = 30/116 (25%), Positives = 48/116 (40%), Gaps = 17/116 (14%)
Frame = +2
Query: 254 LQSSAELYAYTSSLTTYGI*FPTISGLSMSTIFTPRRFLINTLNLLLRTPKSLILEVPLP 433
L+ E+ +YT L G FP + F P F++ + L + P SL ++ L
Sbjct: 280 LKDGNEIESYTRVLVPLGYTFPLMGA------FVPFLFIL-FIAWLYKNPLSLFEQLQLA 332
Query: 434 ----------------YLCNLTSSPSEVSGLTVPT-LLPLSFTSDLLCKSCFGWLT 550
+L NL P++ L + T +L SFT+ + C S F + T
Sbjct: 333 AVGILSFFGPAKIAVGWLLNLMRLPADAFNLYISTSILRQSFTASMACMSIFSFAT 388
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,843,685
Number of Sequences: 1393205
Number of extensions: 9203374
Number of successful extensions: 28713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28692
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
