Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001273A_C01 KMC001273A_c01
(459 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL34331.1|L42984_2 putative [Ankistrodesmus stipitatus] 33 1.8
gb|EAA38904.1| GLP_435_1411_7626 [Giardia lamblia ATCC 50803] 33 1.8
ref|NP_178365.1| CHP-rich zinc finger protein, putative; protein... 32 3.1
gb|EAA25363.1| unknown [Rickettsia sibirica] 32 4.1
ref|XP_225758.1| similar to LD09503p [Drosophila melanogaster] [... 32 4.1
>gb|AAL34331.1|L42984_2 putative [Ankistrodesmus stipitatus]
Length = 242
Score = 32.7 bits (73), Expect = 1.8
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 219 PVNFKQAEGASRVDHWYLDDGNISY--RSTVMKIC 317
PVN ++ + V +WY+DDG++ Y +S ++IC
Sbjct: 108 PVNIEKFLTPATVAYWYMDDGSLKYPGKSNALRIC 142
>gb|EAA38904.1| GLP_435_1411_7626 [Giardia lamblia ATCC 50803]
Length = 2071
Score = 32.7 bits (73), Expect = 1.8
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = -3
Query: 253 LLAPSACLKLTGHVQVTYMCLVFATSLSSYNVFTLSMRYGSLVFLPSWDLLNLLAK*CLL 74
+L+ S L + T +CL+F L+S+N T S+ L+ LL K L
Sbjct: 1528 ILSVSIPAFLWSNPPTTILCLLFLYLLASFNCTTYSI------------LIALLVKQVRL 1575
Query: 73 DGLIVDVEVYMNRIYLSVMIFN 8
L++ + V++N IY S++ N
Sbjct: 1576 AILLISIVVFINIIYCSIIKMN 1597
>ref|NP_178365.1| CHP-rich zinc finger protein, putative; protein id: At2g02620.1
[Arabidopsis thaliana] gi|7487822|pir||T00602
hypothetical protein At2g02620 [imported] - Arabidopsis
thaliana gi|3184278|gb|AAC18925.1| hypothetical protein
[Arabidopsis thaliana]
Length = 635
Score = 32.0 bits (71), Expect = 3.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 200 HVFSVCNFIKFL*CVHIIHEIRFTCFFAKLGFTQSFS*IMPVGWFDC 60
+V S+CNF C+HI IR + ++ FT S +P+G + C
Sbjct: 248 YVCSICNFAAHSDCIHIPQTIRMSRHDHRISFTSS----LPLGIWSC 290
>gb|EAA25363.1| unknown [Rickettsia sibirica]
Length = 121
Score = 31.6 bits (70), Expect = 4.1
Identities = 24/79 (30%), Positives = 39/79 (48%)
Frame = +1
Query: 22 QIDIFCSYKPRHQQSNHPTGII*LKD*VNPNLAKKQVNRISWIM*THYKNLMKLQTLNTC 201
+++IF YKP SN T II N +AK+ + R++ + KN+ ++ + T
Sbjct: 34 KVEIFFEYKPSSNSSNPITKII------NKFIAKENIFRLAVV----EKNIALMEEV-TK 82
Query: 202 KLLEHAPSTSNKRKGLAEW 258
+L+ AP N K EW
Sbjct: 83 DILKSAPIVLNLLKTQGEW 101
>ref|XP_225758.1| similar to LD09503p [Drosophila melanogaster] [Rattus norvegicus]
Length = 1954
Score = 31.6 bits (70), Expect = 4.1
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -2
Query: 401 IYKRLSSLMELLSFSIGAYDYGLFTSPVANFHYSAPIRNITII*VPMIHSASP 243
+ K+ SS+ LL S Y T P+ H+SAP + I VP+ HSA P
Sbjct: 18 VKKQCSSITVLLHHSAPPSQYSSITVPL---HHSAPPSQCSSITVPLHHSAPP 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,553,256
Number of Sequences: 1393205
Number of extensions: 7598242
Number of successful extensions: 13888
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13883
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
