Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001271A_C02 KMC001271A_c02
(686 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_502459.1| Predicted CDS, putative nuclear protein, nemato... 32 8.2
>ref|NP_502459.1| Predicted CDS, putative nuclear protein, nematode specific
[Caenorhabditis elegans] gi|7505529|pir||T23448
hypothetical protein K08D8.2 - Caenorhabditis elegans
gi|4008377|emb|CAA97433.1| Hypothetical protein K08D8.2
[Caenorhabditis elegans]
Length = 123
Score = 32.0 bits (71), Expect = 8.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 573 FGNRKIGKVRRRMVQKIKSYRYWTIQCCCIFIVYVFFPSI 454
F N++I + +++ + ++ W I C CI I+++F SI
Sbjct: 58 FSNQRIPRKNQQVPRSQRNSNCWCIACICILIIFLFIISI 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,199,532
Number of Sequences: 1393205
Number of extensions: 12573706
Number of successful extensions: 32675
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32669
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
