Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001270A_C03 KMC001270A_c03
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG45421.1|AF309495_1 gamete-specific hydroxyproline-rich gly... 49 5e-07
pir||S51939 chitinase (EC 3.2.1.14) precursor - beet gi|488731|e... 47 1e-06
ref|NP_056422.2| DKFZP547E1010 protein [Homo sapiens] gi|1200592... 51 1e-05
dbj|BAA33761.1| NO27 [Xenopus laevis] 51 1e-05
ref|XP_232419.1| hypothetical protein XP_232419 [Rattus norvegicus] 51 1e-05
>gb|AAG45421.1|AF309495_1 gamete-specific hydroxyproline-rich glycoprotein a2 [Chlamydomonas
reinhardtii]
Length = 386
Score = 48.9 bits (115), Expect(2) = 5e-07
Identities = 25/48 (52%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLPPRA--PSAGAPSAGAPSPRALPPRPLPP 256
P PAP PL P +PP P PP PS PS PSPR PP P+PP
Sbjct: 158 PSPAPPSPLPPSPVPPSPAPPSPAPPSPAPPSPAPPSPR--PPSPVPP 203
Score = 46.2 bits (108), Expect(2) = 8e-05
Identities = 25/48 (52%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLPP--RAPSAGAPSAGAPSPRALPPRPLPP 256
P PAP P P PP P PP R PS PS PSP LPP P PP
Sbjct: 173 PSPAPPSPAPPSPAPPSPAPPSPRPPSPVPPSPAPPSP--LPPSPAPP 218
Score = 45.1 bits (105), Expect(2) = 2e-04
Identities = 24/48 (50%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLP--PRAPSAGAPSAGAPSPRALPPRPLPP 256
P PAP PL P PP P P P PS PS PSP PP P PP
Sbjct: 203 PSPAPPSPLPPSPAPPSPAPPSPEPPSPAPPSPEPPSPE--PPSPAPP 248
Score = 43.9 bits (102), Expect(2) = 5e-04
Identities = 26/52 (50%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 110 SPRP-LPAPLRPLGPRALPPRPLP--PRAPSAGAPSAGAPSPRALPPRPLPP 256
SPRP P P P P LPP P P P PS PS PSP PP P PP
Sbjct: 194 SPRPPSPVPPSPAPPSPLPPSPAPPSPAPPSPEPPSPAPPSPE--PPSPEPP 243
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/48 (47%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLPPRA--PSAGAPSAGAPSPRALPPRPLPP 256
P PAP P P +PP P PP PS PS PSP PP P PP
Sbjct: 188 PSPAPPSPRPPSPVPPSPAPPSPLPPSPAPPSPAPPSPE--PPSPAPP 233
Score = 43.5 bits (101), Expect = 0.002
Identities = 23/46 (50%), Positives = 24/46 (52%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALPPRPLPP 256
P PAP P P LPP P+PP S PS PSP PP P PP
Sbjct: 153 PSPAPPSPAPPSPLPPSPVPP---SPAPPSPAPPSP--APPSPAPP 193
Score = 42.4 bits (98), Expect = 0.004
Identities = 23/48 (47%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLP--PRAPSAGAPSAGAPSPRALPPRPLPP 256
P P P P+ P PP PLP P PS PS PSP PP P PP
Sbjct: 193 PSPRPPSPVPPSPAPPSPLPPSPAPPSPAPPSPEPPSP--APPSPEPP 238
Score = 42.4 bits (98), Expect = 0.004
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLP--PRAPSAGAPSAGAPSPRALPPRPLPPRRSVSTTSASCS 292
P PAP P P PP P P P PS PS PSP PP P+PP + +
Sbjct: 228 PSPAPPSPEPPSPEPPSPAPPSPEPPSPEPPSPAPPSP--APPSPVPPSPAPPSPVPPSP 285
Query: 293 SSSSDSSKGYPLGTNEGIGSNKI 361
S S + +G G +I
Sbjct: 286 PPPSPSPPTPIITNGQGTGQQQI 308
Score = 42.0 bits (97), Expect = 0.005
Identities = 31/80 (38%), Positives = 34/80 (41%), Gaps = 5/80 (6%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLP--PRAPSAGAPSAGAPSPRALPPRPLPPRRSVST---TSA 283
P PAP P P PP P P P PS PS PSP +PP P PP S T T+
Sbjct: 243 PSPAPPSPEPPSPEPPSPAPPSPAPPSPVPPSPAPPSP--VPPSPPPPSPSPPTPIITNG 300
Query: 284 SCSSSSSDSSKGYPLGTNEG 343
+ SS G G G
Sbjct: 301 QGTGQQQISSGGATPGPVSG 320
Score = 42.0 bits (97), Expect(2) = 4e-04
Identities = 23/51 (45%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
Frame = +2
Query: 110 SPRPLPAPLRPLGPRALPPRPLPPR--APSAGAPSAGAPSPRALPPRPLPP 256
S P P P P+ P PP P PP PS PS PSP PP P PP
Sbjct: 140 SSPPSPTPPSPMPPSPAPPSPAPPSPLPPSPVPPSPAPPSP--APPSPAPP 188
Score = 41.6 bits (96), Expect = 0.007
Identities = 23/48 (47%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLP--PRAPSAGAPSAGAPSPRALPPRPLPP 256
P PAP P P PP P P P PS PS PSP PP P PP
Sbjct: 218 PSPAPPSPEPPSPAPPSPEPPSPEPPSPAPPSPEPPSPE--PPSPAPP 263
Score = 39.3 bits (90), Expect(2) = 0.007
Identities = 25/57 (43%), Positives = 30/57 (51%), Gaps = 3/57 (5%)
Frame = +2
Query: 95 YTVNHSPRPLPAPLRPLGPRA-LPPRPLP--PRAPSAGAPSAGAPSPRALPPRPLPP 256
Y + SP P P P +P P + PP P+P P PS PS PSP +PP P PP
Sbjct: 125 YLKSLSP-PSPMPPKPSSPPSPTPPSPMPPSPAPPSPAPPSPLPPSP--VPPSPAPP 178
Score = 38.1 bits (87), Expect = 0.076
Identities = 22/48 (45%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLP--PRAPSAGAPSAGAPSPRALPPRPLPP 256
P P P P P PP P P P PS PS PSP PP P PP
Sbjct: 223 PSPEPPSPAPPSPEPPSPEPPSPAPPSPEPPSPEPPSP--APPSPAPP 268
Score = 26.2 bits (56), Expect(2) = 5e-07
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +1
Query: 361 PAPSQ*GIGNACPLQEHLAPRVTAPTSPRPDA*QSPH*TPPSYHQG**TDGTQRCTTSCN 540
P+P PL AP AP SP P + P PPS + S
Sbjct: 198 PSPVPPSPAPPSPLPPSPAPPSPAPPSPEPPSPAPPSPEPPS------PEPPSPAPPSPE 251
Query: 541 PPQPLP 558
PP P P
Sbjct: 252 PPSPEP 257
Score = 23.1 bits (48), Expect(2) = 4e-04
Identities = 18/66 (27%), Positives = 22/66 (33%)
Frame = +1
Query: 361 PAPSQ*GIGNACPLQEHLAPRVTAPTSPRPDA*QSPH*TPPSYHQG**TDGTQRCTTSCN 540
P+P+ P P AP SP P + P PPS + S
Sbjct: 183 PSPAPPSPAPPSPRPPSPVPPSPAPPSPLPPSPAPPSPAPPS------PEPPSPAPPSPE 236
Query: 541 PPQPLP 558
PP P P
Sbjct: 237 PPSPEP 242
Score = 21.6 bits (44), Expect(2) = 0.007
Identities = 18/66 (27%), Positives = 21/66 (31%)
Frame = +1
Query: 361 PAPSQ*GIGNACPLQEHLAPRVTAPTSPRPDA*QSPH*TPPSYHQG**TDGTQRCTTSCN 540
P+P+ P AP P SP P + P PPS S
Sbjct: 173 PSPAPPSPAPPSPAPPSPAPPSPRPPSPVPPSPAPPSPLPPS------PAPPSPAPPSPE 226
Query: 541 PPQPLP 558
PP P P
Sbjct: 227 PPSPAP 232
Score = 21.2 bits (43), Expect(2) = 8e-05
Identities = 17/66 (25%), Positives = 22/66 (32%)
Frame = +1
Query: 361 PAPSQ*GIGNACPLQEHLAPRVTAPTSPRPDA*QSPH*TPPSYHQG**TDGTQRCTTSCN 540
P+P+ P P P SP P + + P PPS S
Sbjct: 218 PSPAPPSPEPPSPAPPSPEPPSPEPPSPAPPSPEPPSPEPPS-----------PAPPSPA 266
Query: 541 PPQPLP 558
PP P+P
Sbjct: 267 PPSPVP 272
Score = 20.8 bits (42), Expect(2) = 2e-04
Identities = 13/42 (30%), Positives = 15/42 (34%)
Frame = +1
Query: 361 PAPSQ*GIGNACPLQEHLAPRVTAPTSPRPDA*QSPH*TPPS 486
P+P P AP P SP P + P PPS
Sbjct: 248 PSPEPPSPEPPSPAPPSPAPPSPVPPSPAPPSPVPPSPPPPS 289
Score = 20.8 bits (42), Expect(2) = 5e-04
Identities = 12/42 (28%), Positives = 16/42 (37%)
Frame = +1
Query: 361 PAPSQ*GIGNACPLQEHLAPRVTAPTSPRPDA*QSPH*TPPS 486
P+P P P AP SP P + P +PP+
Sbjct: 253 PSPEPPSPAPPSPAPPSPVPPSPAPPSPVPPSPPPPSPSPPT 294
>pir||S51939 chitinase (EC 3.2.1.14) precursor - beet gi|488731|emb|CAA55883.1|
chitinase [Beta vulgaris] gi|829258|emb|CAA56946.1|
Chitinase [Beta vulgaris]
Length = 439
Score = 47.0 bits (110), Expect(2) = 4e-05
Identities = 26/51 (50%), Positives = 28/51 (53%), Gaps = 2/51 (3%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPP--RPLPPRAPSAGAPSAGAPSPRALPPRPLPPR 259
P P P P RP PR PP RP PPR P+ P P+PR PPRP PR
Sbjct: 67 PTPRPPPPRPPTPRPPPPTPRPPPPRPPTPRPPP--PPTPRPPPPRPPTPR 115
Score = 46.6 bits (109), Expect(3) = 1e-06
Identities = 21/42 (50%), Positives = 23/42 (54%)
Frame = +2
Query: 131 PLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALPPRPLPP 256
P RP PR PRP PPR P+ P P+PR PP P PP
Sbjct: 48 PSRPTPPRPPTPRPPPPRPPTPRPPPPRPPTPRPPPPTPRPP 89
Score = 46.2 bits (108), Expect(3) = 8e-06
Identities = 24/48 (50%), Positives = 25/48 (52%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALPPRPLPP 256
P P P P RP PR PPRP PR P P+ P PR PRP PP
Sbjct: 57 PTPRPPPPRPPTPRPPPPRPPTPRPP---PPTPRPPPPRPPTPRPPPP 101
Score = 45.1 bits (105), Expect(2) = 2e-04
Identities = 21/44 (47%), Positives = 22/44 (49%)
Frame = +2
Query: 125 PAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALPPRPLPP 256
P P RP PR PPRP PR P P+ P P PP P PP
Sbjct: 51 PTPPRPPTPRPPPPRPPTPRPPPPRPPTPRPPPPTPRPPPPRPP 94
Score = 44.3 bits (103), Expect(2) = 4e-04
Identities = 26/49 (53%), Positives = 28/49 (57%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALPPRPLPPR 259
PRP P P RP PR PRP PPR P+ P P+PR PPRP PR
Sbjct: 54 PRP-PTP-RPPPPRPPTPRPPPPRPPT---PRPPPPTPRPPPPRPPTPR 97
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/48 (47%), Positives = 24/48 (49%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALPPRPLPP 256
P P P P P PR PP P PR P PS PSP + PP P PP
Sbjct: 118 PPPTPRPPPPPTPRPPPPSPPTPRPPPPPPPSPPTPSPPS-PPSPEPP 164
Score = 43.9 bits (102), Expect = 0.001
Identities = 21/48 (43%), Positives = 23/48 (47%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALPPRPLPP 256
P P P P P P PP P PP P+ PS +P P PP P PP
Sbjct: 126 PPPTPRPPPPSPPTPRPPPPPPPSPPTPSPPSPPSPEP-PTPPEPTPP 172
Score = 43.9 bits (102), Expect = 0.001
Identities = 26/57 (45%), Positives = 27/57 (46%), Gaps = 3/57 (5%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPP---RPLPPRAPSAGAPSAGAPSPRALPPRPLPPRRSVST 274
P P P P RP PR PP RP PPR P+ P P P PP P PP S T
Sbjct: 84 PTPRPPPPRPPTPRPPPPPTPRPPPPRPPTPRPPPPPTPRPPP-PPTPRPPPPSPPT 139
Score = 42.7 bits (99), Expect = 0.003
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPP-RPLPPRAPSAGAPSAGAPSPRALPPRPLPP 256
P P P P RP PR PP P PP P+ P P+PR PP P P
Sbjct: 102 PTPRPPPPRPPTPRPPPPPTPRPPPPPTPRPPPPSPPTPRPPPPPPPSP 150
Score = 42.4 bits (98), Expect = 0.004
Identities = 24/51 (47%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 110 SPRPLPAPL-RPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALP-PRPLPP 256
+PRP P P RP PR PRP PP P P P P + P PRP PP
Sbjct: 95 TPRPPPPPTPRPPPPRPPTPRPPPPPTPRPPPPPTPRPPPPSPPTPRPPPP 145
Score = 42.4 bits (98), Expect = 0.004
Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 110 SPRPLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALP-PRPLPP 256
+PRP P RP PR PRP PP P P P P P PRP PP
Sbjct: 78 TPRPPPPTPRPPPPRPPTPRPPPPPTPRPPPPRPPTPRPPPPPTPRPPPP 127
Score = 40.8 bits (94), Expect = 0.012
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAP--SPRALPPRPLPP 256
P P P P P PR PP P P PS +P + P P PP P PP
Sbjct: 128 PTPRPPPPSPPTPRPPPPPPPSPPTPSPPSPPSPEPPTPPEPTPPTPTPP 177
Score = 40.8 bits (94), Expect = 0.012
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +2
Query: 113 PRPLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRALPPRPLPPR 259
P P P P P P PP P PP P+ P P+PR PP P PR
Sbjct: 77 PTPRPPPPTPRPPPPRPPTPRPPPPPTPRPPPPRPPTPR--PPPPPTPR 123
Score = 40.8 bits (94), Expect = 0.012
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 119 PLPAPLRPLGPRALPPRPLPPRAPSAGAP-SAGAPSPRALPPRPLPPR 259
P P P P PR PPRP PR P P P+PR PP P PR
Sbjct: 94 PTPRPPPPPTPRPPPPRPPTPRPPPPPTPRPPPPPTPRPPPPSPPTPR 141
Score = 39.7 bits (91), Expect = 0.026
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 161 PPRPLPPRAPSAGAPSAGAPSPRALPPRPLPPR 259
P RP PPR P+ P P+PR PPRP PR
Sbjct: 48 PSRPTPPRPPTPRPPPPRPPTPRPPPPRPPTPR 80
Score = 23.1 bits (48), Expect(3) = 1e-06
Identities = 10/23 (43%), Positives = 12/23 (51%)
Frame = +1
Query: 418 PRVTAPTSPRPDA*QSPH*TPPS 486
PR P +PRP +P PPS
Sbjct: 114 PRPPPPPTPRPPPPPTPRPPPPS 136
Score = 22.7 bits (47), Expect(3) = 8e-06
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 267 SPRPLPPAALAPRTAAKATPWVP 335
+PRP PP PR TP P
Sbjct: 103 TPRPPPPRPPTPRPPPPPTPRPP 125
Score = 22.7 bits (47), Expect(3) = 1e-06
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 267 SPRPLPPAALAPRTAAKATPWVP 335
+PRP PP PR TP P
Sbjct: 85 TPRPPPPRPPTPRPPPPPTPRPP 107
Score = 21.6 bits (44), Expect(2) = 4e-05
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 267 SPRPLPPAALAPRTAAKATPWVP 335
+PRP PP +P T + +P P
Sbjct: 139 TPRPPPPPPPSPPTPSPPSPPSP 161
Score = 21.2 bits (43), Expect(2) = 2e-04
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 267 SPRPLPPAALAPRTAAKATPWVP 335
+PRP PP+ PR P P
Sbjct: 129 TPRPPPPSPPTPRPPPPPPPSPP 151
Score = 20.8 bits (42), Expect(3) = 8e-06
Identities = 8/23 (34%), Positives = 12/23 (51%)
Frame = +1
Query: 418 PRVTAPTSPRPDA*QSPH*TPPS 486
P + P+ P P+ P TPP+
Sbjct: 151 PTPSPPSPPSPEPPTPPEPTPPT 173
Score = 20.8 bits (42), Expect(2) = 4e-04
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 267 SPRPLPPAALAPRTAAKATPWVP 335
+PRP PP P + TP P
Sbjct: 121 TPRPPPPPTPRPPPPSPPTPRPP 143
>ref|NP_056422.2| DKFZP547E1010 protein [Homo sapiens]
gi|12005924|gb|AAG44673.1|AF261137_1 HT031 [Homo
sapiens]
Length = 248
Score = 50.8 bits (120), Expect = 1e-05
Identities = 31/53 (58%), Positives = 32/53 (59%), Gaps = 3/53 (5%)
Frame = -1
Query: 261 RRGG-KGRGGRARGEGAPAEGAPAEGARGGRGRG--GRARGPRGRRGAGRGRG 112
RRGG +GRGG G G GA G GGRGRG GR RG G RG GRGRG
Sbjct: 152 RRGGVRGRGGP--GRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRG 202
Score = 31.2 bits (69), Expect = 9.3
Identities = 29/76 (38%), Positives = 31/76 (40%), Gaps = 25/76 (32%)
Frame = -1
Query: 264 ERRGGKGRGGRARG----EGAPA--EGAPAEGARGGRG-----------------RGGRA 154
+ R G+ G ARG G P G P G RGGR RGGRA
Sbjct: 85 QARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRA 144
Query: 153 RGPRG--RRGAGRGRG 112
PR RRG RGRG
Sbjct: 145 VAPRMGLRRGGVRGRG 160
>dbj|BAA33761.1| NO27 [Xenopus laevis]
Length = 248
Score = 50.8 bits (120), Expect = 1e-05
Identities = 30/57 (52%), Positives = 32/57 (55%), Gaps = 3/57 (5%)
Frame = -1
Query: 261 RRGGKGRGGRARGEGAPAEGAPAEGARGG---RGRGGRARGPRGRRGAGRGRGE*LT 100
RRG +GRGG RG A G G RGG RGRGG RG RG GRGRG +T
Sbjct: 151 RRGMRGRGGPGRGMMRGAMGRGGMGGRGGMGARGRGGMTRGRGFGRGRGRGRGRGVT 207
Score = 38.9 bits (89), Expect = 0.044
Identities = 25/47 (53%), Positives = 26/47 (55%)
Frame = -1
Query: 258 RGGKGRGGRARGEGAPAEGAPAEGARGGRGRGGRARGPRGRRGAGRG 118
RGG+G G ARG A G G RGG R G RG RGR G GRG
Sbjct: 119 RGGRGGRGMARGSMA-MRGQNLRG-RGGVSRMGLRRGMRGRGGPGRG 163
Score = 33.1 bits (74), Expect = 2.4
Identities = 23/50 (46%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 255 GGKGRGGRA-RGEGAPAEGAPAEGARGGRGRGGRARGPRGRRGAG-RGRG 112
GG RG RG G G RGGRG G ARG RG RGRG
Sbjct: 94 GGLVRGAIGMRGAGMGLRGVQRGVMRGGRGGRGMARGSMAMRGQNLRGRG 143
>ref|XP_232419.1| hypothetical protein XP_232419 [Rattus norvegicus]
Length = 249
Score = 50.8 bits (120), Expect = 1e-05
Identities = 31/53 (58%), Positives = 32/53 (59%), Gaps = 3/53 (5%)
Frame = -1
Query: 261 RRGG-KGRGGRARGEGAPAEGAPAEGARGGRGRG--GRARGPRGRRGAGRGRG 112
RRGG +GRGG G G GA G GGRGRG GR RG G RG GRGRG
Sbjct: 153 RRGGVRGRGGP--GRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRG 203
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,334,821
Number of Sequences: 1393205
Number of extensions: 14895174
Number of successful extensions: 227308
Number of sequences better than 10.0: 6573
Number of HSP's better than 10.0 without gapping: 93410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181445
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
