Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001268A_C01 KMC001268A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187718.1| unknown protein; protein id: At3g11070.1, suppo... 132 4e-30
gb|AAM62637.1| unknown [Arabidopsis thaliana] 125 4e-28
ref|NP_568157.1| expressed protein; protein id: At5g05520.1, sup... 125 4e-28
ref|NP_014213.1| involved in telomeric silencing; Ubp10p [Saccha... 32 8.8
emb|CAB01922.1| COS2.3 [Ciona intestinalis] 32 8.8
>ref|NP_187718.1| unknown protein; protein id: At3g11070.1, supported by cDNA:
gi_20466220 [Arabidopsis thaliana]
gi|6016688|gb|AAF01515.1|AC009991_11 unknown protein
[Arabidopsis thaliana]
gi|12321882|gb|AAG50978.1|AC073395_20 unknown protein;
4967-6981 [Arabidopsis thaliana]
gi|20466221|gb|AAM20428.1| unknown protein [Arabidopsis
thaliana] gi|25084079|gb|AAN72169.1| unknown protein
[Arabidopsis thaliana]
Length = 520
Score = 132 bits (332), Expect = 4e-30
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = -3
Query: 621 ADLSFDLPVRWLREHGIHGHVFAGVGNTAKLTQNEYKNFSPRKFLESFRTSVGCGFVVPT 442
ADLSFDLPVRWLRE GIHGHVFA GN AKL++NE++NF+ KFLE+FRTSVG G V+PT
Sbjct: 428 ADLSFDLPVRWLRERGIHGHVFACAGNMAKLSENEFRNFTAPKFLETFRTSVGAGIVLPT 487
Query: 441 KLFRLEGNFYHILRQDEHDRGKTGFRFSFSAPS 343
LFR+E N+ HIL++ EHD+ ++G +FSA S
Sbjct: 488 SLFRMELNYCHILKKQEHDQARSGVFLTFSASS 520
>gb|AAM62637.1| unknown [Arabidopsis thaliana]
Length = 524
Score = 125 bits (314), Expect = 4e-28
Identities = 56/93 (60%), Positives = 73/93 (78%)
Frame = -3
Query: 621 ADLSFDLPVRWLREHGIHGHVFAGVGNTAKLTQNEYKNFSPRKFLESFRTSVGCGFVVPT 442
ADLSFD P++W R+ GIHGHVFA GN A+L++N+Y+NF+ K LE+FR+SVG G VVPT
Sbjct: 432 ADLSFDFPLKWFRDRGIHGHVFACAGNMAELSENKYRNFTAPKLLETFRSSVGAGIVVPT 491
Query: 441 KLFRLEGNFYHILRQDEHDRGKTGFRFSFSAPS 343
LFR+E N+ HIL++ EHDR K+GF +FS S
Sbjct: 492 SLFRMELNYCHILKKQEHDRAKSGFFMTFSTSS 524
>ref|NP_568157.1| expressed protein; protein id: At5g05520.1, supported by cDNA:
150381., supported by cDNA: gi_16648862, supported by
cDNA: gi_20259795 [Arabidopsis thaliana]
gi|10178129|dbj|BAB11541.1| gene_id:MOP10.6~unknown
protein [Arabidopsis thaliana]
gi|16648863|gb|AAL24283.1| Unknown protein [Arabidopsis
thaliana] gi|20259796|gb|AAM13245.1| unknown protein
[Arabidopsis thaliana]
Length = 524
Score = 125 bits (314), Expect = 4e-28
Identities = 56/93 (60%), Positives = 73/93 (78%)
Frame = -3
Query: 621 ADLSFDLPVRWLREHGIHGHVFAGVGNTAKLTQNEYKNFSPRKFLESFRTSVGCGFVVPT 442
ADLSFD P++W R+ GIHGHVFA GN A+L++N+Y+NF+ K LE+FR+SVG G VVPT
Sbjct: 432 ADLSFDFPLKWFRDRGIHGHVFACAGNMAELSENKYRNFTAPKLLETFRSSVGAGIVVPT 491
Query: 441 KLFRLEGNFYHILRQDEHDRGKTGFRFSFSAPS 343
LFR+E N+ HIL++ EHDR K+GF +FS S
Sbjct: 492 SLFRMELNYCHILKKQEHDRAKSGFFMTFSTSS 524
>ref|NP_014213.1| involved in telomeric silencing; Ubp10p [Saccharomyces cerevisiae]
gi|1717874|sp|P53874|UBPA_YEAST Ubiquitin
carboxyl-terminal hydrolase 10 (Ubiquitin thiolesterase
10) (Ubiquitin-specific processing protease 10)
(Deubiquitinating enzyme 10) (Disrupter of telomere
silencing protein 4) gi|2131913|pir||S63141 hypothetical
protein YNL186w - yeast (Saccharomyces cerevisiae)
gi|1302173|emb|CAA96080.1| ORF YNL186w [Saccharomyces
cerevisiae]
Length = 792
Score = 31.6 bits (70), Expect = 8.8
Identities = 29/103 (28%), Positives = 45/103 (43%)
Frame = +2
Query: 200 QSPLRIFSLYLKARK*EYSTSDPVTNSKTV*SFKNT*KGKNLSCEPL*EGAEKLNLNPVF 379
+ P SL+LK +K SD ++S S + N + +P + +NLN
Sbjct: 510 EQPFYDLSLHLKGKKKLDPNSDLSSDSINGTSATTSTTTSNAATKPSLSSSSSVNLNNGS 569
Query: 380 PRSCSSCLSMW*KLPSRRKSLVGTTNPHPTDVRKDSKNFRGEK 508
P + +S LS + S KS+ NP V K+ K + EK
Sbjct: 570 PFAAASDLSSANRRFSIEKSIKDFFNPELIKVDKEQKGYVCEK 612
>emb|CAB01922.1| COS2.3 [Ciona intestinalis]
Length = 974
Score = 31.6 bits (70), Expect = 8.8
Identities = 17/46 (36%), Positives = 23/46 (49%)
Frame = +2
Query: 425 SRRKSLVGTTNPHPTDVRKDSKNFRGEKFLYSF*VNLAVFPTPAKT 562
S +KS T+ P DV D + G+ L+S +NL P P KT
Sbjct: 844 SSQKSTRKPTSSRPADVDNDDDDVMGQSTLFSTKLNLTSTPKPKKT 889
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,897,259
Number of Sequences: 1393205
Number of extensions: 9994177
Number of successful extensions: 18764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18764
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
