Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001266A_C01 KMC001266A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195447.1| putative protein; protein id: At4g37300.1, supp... 100 2e-20
ref|NP_781982.1| putative permease [Clostridium tetani E88] gi|2... 33 2.4
ref|NP_727440.1| CG32677-PA [Drosophila melanogaster] gi|2283204... 32 4.0
dbj|BAC25703.1| unnamed protein product [Mus musculus] 32 4.0
ref|NP_652415.1| CG13038-PA [Drosophila melanogaster] gi|7294134... 32 4.0
>ref|NP_195447.1| putative protein; protein id: At4g37300.1, supported by cDNA:
gi_13877858, supported by cDNA: gi_14517511, supported
by cDNA: gi_15809769, supported by cDNA: gi_17065601
[Arabidopsis thaliana] gi|25372664|pir||G85440
hypothetical protein AT4g37300 [imported] - Arabidopsis
thaliana gi|2464852|emb|CAB16754.1| putative protein
[Arabidopsis thaliana] gi|7270713|emb|CAB80396.1|
putative protein [Arabidopsis thaliana]
gi|13877859|gb|AAK44007.1|AF370192_1 unknown protein
[Arabidopsis thaliana] gi|14517512|gb|AAK62646.1|
AT4g37300/C7A10_60 [Arabidopsis thaliana]
gi|15809770|gb|AAL06813.1| AT4g37300/C7A10_60
[Arabidopsis thaliana] gi|17065602|gb|AAL33781.1|
unknown protein [Arabidopsis thaliana]
Length = 173
Score = 100 bits (248), Expect = 2e-20
Identities = 56/116 (48%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Frame = -2
Query: 552 DIPELHKFRSLRSRSEAILSTEGIIDA-QDEFVETQYYKELTSIDKTHHTTGSGFIKAVT 376
D PE KF+SL+S++ + EG A QDEF+ET+YY LT+IDK HHTTGSGFI V
Sbjct: 59 DHPEADKFQSLQSQTHGKVLGEGDSSAVQDEFLETEYYSNLTAIDKQHHTTGSGFINVVK 118
Query: 375 E-GGEGGYEIANNGVAAGETRFRGYKGNPATNDWVPNCDDDNLDFVSSKPNRSEST 211
E GE + + G + Y+ NPATN+W+P ++D SSKPNRSES+
Sbjct: 119 EDNGEESEAVTAAAIGDGGEK-AVYRSNPATNEWIPATEEDFDSESSSKPNRSESS 173
>ref|NP_781982.1| putative permease [Clostridium tetani E88]
gi|28203477|gb|AAO35919.1| putative permease
[Clostridium tetani E88]
Length = 398
Score = 33.1 bits (74), Expect = 2.4
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 280 VISGRVAFIASEPSFTCGNTIVCNLVSTFTSF 375
+ SGR+A IA+ P+ T GN+I+C ++ T +
Sbjct: 353 LFSGRLATIATNPNITIGNSIICLVIWTIACY 384
>ref|NP_727440.1| CG32677-PA [Drosophila melanogaster] gi|22832042|gb|AAF46614.3|
CG32677-PA [Drosophila melanogaster]
Length = 1400
Score = 32.3 bits (72), Expect = 4.0
Identities = 19/56 (33%), Positives = 26/56 (45%)
Frame = -2
Query: 378 TEGGEGGYEIANNGVAAGETRFRGYKGNPATNDWVPNCDDDNLDFVSSKPNRSEST 211
T G GG + G+ G Y+ +P T D+ NC D LD +S + N ST
Sbjct: 396 TSSGHGGGVGVSGGLGVGPGGGHNYRYSPETTDYDSNCGD--LDSLSGEMNGGVST 449
>dbj|BAC25703.1| unnamed protein product [Mus musculus]
Length = 137
Score = 32.3 bits (72), Expect = 4.0
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 212 VLSLLFGFEETKSRLSSSQLGTQSLVAGLPL*PLNRVSPAATPLF--AISYPPSPP 373
+L LL K SS+Q+G + L+ G+ PL ++ AA P A +PP PP
Sbjct: 72 LLPLLVAESLVKEVASSTQVGERPLITGMLRKPLGPIAGAAPPPIGAAARHPPPPP 127
>ref|NP_652415.1| CG13038-PA [Drosophila melanogaster] gi|7294134|gb|AAF49488.1|
CG13038-PA [Drosophila melanogaster]
Length = 83
Score = 32.3 bits (72), Expect = 4.0
Identities = 23/67 (34%), Positives = 33/67 (48%), Gaps = 5/67 (7%)
Frame = -2
Query: 528 RSLRSRSEAILSTEGIIDAQDEFV-----ETQYYKELTSIDKTHHTTGSGFIKAVTEGGE 364
R L + +++S +G AQ FV + Y E T++++T HT KA EGG
Sbjct: 14 RLLIDSAPSVVSYQGSSQAQTRFVIAPMGRSLGYVEPTNLNRTFHT------KATQEGGA 67
Query: 363 GGYEIAN 343
GYE N
Sbjct: 68 TGYEQLN 74
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,191,837
Number of Sequences: 1393205
Number of extensions: 10591672
Number of successful extensions: 32940
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 31355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32907
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
